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The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations
Authors:Rizzi  Andrea  Jensen  Travis  Slochower  David R  Aldeghi  Matteo  Gapsys  Vytautas  Ntekoumes  Dimitris  Bosisio  Stefano  Papadourakis  Michail  Henriksen  Niel M  de Groot  Bert L  Cournia  Zoe  Dickson  Alex  Michel  Julien  Gilson  Michael K  Shirts  Michael R  Mobley  David L  Chodera  John D
Institution:1.Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
;2.Tri-Institutional Training Program in Computational Biology and Medicine, New York, NY, 10065, USA
;3.Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO, 80309, USA
;4.Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, 92093, USA
;5.Max Planck Institute for Biophysical Chemistry, Computational Biomolecular Dynamics Group, G?ttingen, Germany
;6.Biomedical Research Foundation, Academy of Athens, 4 Soranou Ephessiou, 11527, Athens, Greece
;7.EaStCHEM School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
;8.Atomwise, 717 Market St Suite 800, San Francisco, CA, 94103, USA
;9.Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA
;10.Department of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, USA
;11.Department of Pharmaceutical Sciences and Department of Chemistry, University of California, Irvine, California, 92697, USA
;
Abstract:Journal of Computer-Aided Molecular Design - Approaches for computing small molecule binding free energies based on molecular simulations are now regularly being employed by academic and industry...
Keywords:
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