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Characterizing the Intermediates Compound I and II in the Cytochrome P450 Catalytic Cycle with Nonlinear X‐ray Spectroscopy: A Simulation Study
Authors:Dr. Yu Zhang  Dr. Jason D. Biggs  Prof. Dr. Shaul Mukamel
Affiliation:Dept. of Chemistry, University of California, 450 Rowland Hall, Irvine, California 92697 (USA)
Abstract:Cytochrome P450 enzymes are an important family of biocatalysts that oxidize chemically inert C?H bonds. There are many unresolved questions regarding the catalytic reaction intermediates, in particular P450 Compound I (Cpd‐I) and II (Cpd‐II). By using simple molecular models, we simulate various X‐ray spectroscopy signals, including X‐ray absorption near‐edge structure (XANES), resonant inelastic X‐ray scattering (RIXS), and stimulated X‐ray Raman spectroscopy (SXRS) of the low‐ and high‐spin states of Cpd‐I and II. Characteristic peak patterns are presented and connected to the corresponding electronic structures. These X‐ray spectroscopy techniques are complementary to more conventional infrared and optical spectroscopy and they help to elucidate the evolving electronic structures of transient species along the reaction path.
Keywords:density functional calculations  molecular modeling  Raman spectroscopy  reaction mechanisms  X‐ray absorption spectroscopy
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