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Langevin trajectories between fixed concentrations
Authors:Nadler B  Schuss Z  Singer A
Affiliation:Department of Mathematics, Yale University, 10 Hillhouse Avenue P.O. Box 208283, New Haven, Connecticut 06520-8283, USA.
Abstract:We consider the trajectories of particles diffusing between two infinite baths of fixed concentrations connected by a channel, e.g., a protein channel of a biological membrane. The steady state influx and efflux of Langevin trajectories at the boundaries of a finite volume containing the channel and parts of the two baths is replicated by termination of outgoing trajectories and injection according to a residual phase space density. We present a simulation scheme that maintains averaged fixed concentrations without creating spurious boundary layers, consistent with the assumed physics.
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