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Merging covering arrays and compressing multiple sequence alignments
Authors:Andreas H. Ronneseth
Affiliation:Computer Science and Engineering, Arizona State University, Tempe, AZ 85287-8809, United States
Abstract:Covering arrays have been extensively studied, in part because of their applications in testing interacting software components. In this setting, fast and flexible methods are needed to construct covering arrays of close-to-minimum size. However testing scenarios often impose additional structure on the tests that can be selected. We extend a greedy method to construct test suites for complex systems that have a hierarchical structure in which components combine to form subsystems, which in turn form larger subsystems, until the entire system is formed. The algorithm for merging covering arrays that we propose is then shown to have further potential application in the compression of multiple sequence alignments of genomic data.
Keywords:Covering arrays   Mixed-level covering arrays     mmlsi104"   onclick="  submitCitation('/science?_ob=MathURL&  _method=retrieve&  _eid=1-s2.0-S0166218X0700488X&  _mathId=si104.gif&  _pii=S0166218X0700488X&  _issn=0166218X&  _acct=C000054348&  _version=1&  _userid=3837164&  md5=62e2ecf8203a03c010373bb45ed0565f')"   style="  cursor:pointer  "   alt="  Click to view the MathML source"   title="  Click to view the MathML source"  >  formulatext"   title="  click to view the MathML source"  >t-way interaction coverage   Software interaction testing   Multiple sequence alignment
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