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Quasi-median hulls in Hamming space are Steiner hulls
Authors:Hans-Jü  rgen Bandelt,Arne Rö  hl
Affiliation:Department of Mathematics, University of Hamburg, Bundesstr. 55, 20146 Hamburg, Germany
Abstract:A Hamming space Λn consists of all sequences of length n over an alphabet Λ and is endowed with the Hamming distance. In particular, any set of aligned DNA sequences of fixed length constitutes a subspace of a Hamming space with respect to mismatch distance. The quasi-median operation returns for any three sequences u,v,w the sequence which in each coordinate attains either the majority coordinate from u,v,w or else (in the case of a tie) the coordinate of the first entry, u; for a subset of Λn the iterative application of this operation stabilizes in its quasi-median hull. We show that for every finite tree interconnecting a given subset X of Λn there exists a shortest realization within Λn for which all interior nodes belong to the quasi-median hull of X. Hence the quasi-median hull serves as a Steiner hull for the Steiner problem in Hamming space.
Keywords:Steiner minimal tree   Steiner hull   Maximum parsimony   Hamming space   Quasi-median operation
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