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Predicting Optimal Lengths of Random Knots
Authors:Dobay  Akos  Sottas  Pierre-Edouard  Dubochet   Jacques  Stasiak   Andrzej
Affiliation:(1) Laboratory of Ultrastructural Analysis, University of Lausanne, 1015 Lausanne, Switzerland;(2) Center for Neuromimetic Systems, Swiss Federal Institute of Technology, EPFL-DI, 1015 Lausanne, Switzerland
Abstract:In a thermally fluctuating long linear polymeric chain in a solution, the ends, from time to time, approach each other. At such an instance, the chain can be regarded as closed and thus will form a knot or rather a virtual knot. Several earlier studies of random knotting demonstrated that simpler knots show a higher occurrence for shorter random walks than do more complex knots. However, up to now there have been no rules that could be used to predict the optimal length of a random walk, i.e. the length for which a given knot reaches its highest occurrence. Using numerical simulations, we show here that a power law accurately describes the relation between the optimal lengths of random walks leading to the formation of different knots and the previously characterized lengths of ideal knots of a corresponding type.
Keywords:knots  polymers  scaling laws  DNA  random walks  biophysics
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