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Asymptotics of a Brownian ratchet for protein translocation
Authors:Andrej Depperschmidt  Peter Pfaffelhuber
Institution:Albert-Ludwigs University Freiburg, Germany
Abstract:Protein translocation in cells has been modelled by Brownian ratchets  . In such models, the protein diffuses through a nanopore. On one side of the pore, ratcheting molecules bind to the protein and hinder it to diffuse out of the pore. We study a Brownian ratchet by means of a reflected Brownian motion (Xt)t0(Xt)t0 with a changing reflection point (Rt)t0(Rt)t0. The rate of change of RtRt is γ(XtRt)γ(XtRt) and the new reflection boundary is distributed uniformly between RtRt and XtXt. The asymptotic speed of the ratchet scales with γ1/3γ1/3 and the asymptotic variance is independent of γγ.
Keywords:primary  92C37  secondary  60J65  60G55  60K05
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