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Improved MALDI‐MS method for the highly sensitive and reproducible detection of biomarker peaks for the proteotyping of Salmonella serotypes
Authors:Yuko Fukuyama  Teruyo Ojima‐Kato  Satomi Nagai  Keisuke Shima  Shinji Funatsu  Yoshihiro Yamada  Hiroto Tamura  Shizuo Nomura  Koretsugu Ogata  Sadanori Sekiya  Shinichi Iwamoto  Koichi Tanaka
Abstract:The rapid identification and classification of pathogenic microorganisms, including Salmonella enterica, is important for the surveillance and prevention of foodborne diseases. Matrix‐assisted laser desorptionionization time‐of‐flight mass spectrometry (MALDI‐TOFMS) has been shown to be an effective tool for the rapid identification of microorganisms. In a previous report, a mass database consisting of 12 biomarker proteins, S8, L15, L17, L21, L25, S7, superoxide dismutase (SodA), peptidylprolyl cis‐trans isomerase C, Gns, YibT, YaiA, and YciF, was introduced for the serotyping of S. enterica via MALDI‐MS (Applied Microbiology and Biotechnology, 2017, 101, 8557‐8569). However, the reproducibility of peak detection of biomarkers such as SodA at mz 23 000 was poor. We report here an optimized MALDI‐MS method for detecting these biomarkers with high sensitivity and reproducibility. The issue was solved by controlling the bacterial concentration at 1 × 10 to 1 × 102 MFU (3 × 106 to 3 × 107 CFUμL, as calculated from the MFU), using the colony suspension supernatant obtained by centrifugation, and using matrix additives such as methylenediphosphonic acid and N‐decyl‐β‐D‐maltopyranoside. We propose that the method including the above steps is one of the best for detecting biomarkers with high sensitivity and reproducibility.
Keywords:biomarkers  MALDI‐MS  proteotyping  Salmonella  serotype
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