Prediction of the global energy minimum conformation of polypeptides by the High Directional Monte Carlo procedure

Abstract

A new Monte Carlo sampling scheme, namely High Directional Monte Carlo procedure, is used to obtain the global energy minimum conformations of polypeptides such as enkephalin and melittin. The resultant structures of enkephalin and melittin agree well with previous results of theoretical and experimental studies. Particularly, it is shown that some important parts in the conformation, such as the hinge region that principally determines the tertiary structure of proteins, are correctly described by the new method. The resultant structures are compared with those of other works and their stereoscopic views are shown.