Catalytic DNA-and RNA-hydrolyzing antibodies from milk of healthy human mothers

Various catalytically active antibodies (Abs), or abzymes, have been detected recently in the sera of patients with autoimmune pathologies, in whom their presence is probably associated with autoimmunization. Normal humans are generally not considered to have abzymes, since no obvious immunizing factors are present. Here is shown by different methods that IgG from the milk of normal females possesses both DNase and RNase activities. The activities were also present in the IgG F(ab′)₂ and Fab fragments. Affinity modification of IgG by the chemically reactive derivative of an oligonucleotide led to preferential modification of the L chain of IgG. After separation of the subunits by sodium dodecyl sulfate electrophoresis in a gel containing DNA, an in-gel assay showed DNase activity in the L chain. The L chain separated by affinity chromatography on DNA-cellulose was catalytically active. These findings speak in favor of the generation of cat alytic Abs by the immune system of healthy mothers. It is known that the treatment of adults with DNases and RNases offers protection from viral and bacterial diseases. Since breast milk protects the infants from infec tions until the immune system is developed, this raises the possibility that catalytic Abs like nucleases, may possess a protective role.     

基于纳米操纵和单分子成像及分析技术的DNA与DNase I相互作用的表面机械生化过程和动力学研究

本文采用了"多步的改进的动态分子梳"纳米操纵技术(multi-step modified dynamic molecular combing,MMDMC)实现样品制备获得不同拉伸程度单个DNA分子,利用原子力显微镜重定位成像和单分子分析,对反应前后不同拉伸程度DNA分子的DNase I酶切产生缺口情况进行统计,在一定拉伸范围内讨论了在表面上DNase I酶切反应速率变化的动力学信息.该不同拉伸程度的DNA与DNase I相互作用的表面机械生化过程对于生物分子多次反复相互作用研究体系具有代表性意义.     

Novel high-sensitive fluorescent detection of deoxyribonuclease I based on DNA-templated gold/silver nanoclusters

Herein, fluorescent DNA-templated gold/silver nanoclusters (DNA-Au/Ag NCs) are presented as a novel probe for sensitive detection of deoxyribonuclease I (DNase I). The procedure is based on quenching fluorescence of DNA-Au/Ag NCs by DNase I digestion of the DNA (5′-CCCTTAATCCCC-3′) template. This decrease in fluorescence intensity permitted sensitive detection of DNase I in a linear range of 0.013–60 μg mL⁻¹, with a detection limit of 3 ng mL⁻¹ at a signal-to-noise ratio of 3. Furthermore, the practicality of this probe for detection of DNase I in human serum and saliva samples was validated, demonstrating its advantages of simplicity, selectivity, sensitivity and low cost. Importantly, satisfactory agreement between results obtained by the fluorescent method described here and high performance liquid chromatography (HPLC) further confirmed the reliability and accuracy of this approach.     

A Multinuclear Metal Complex Based DNase‐Mimetic Artificial Enzyme: Matrix Cleavage for Combating Bacterial Biofilms

Extracellular DNA (eDNA) is an essential structural component during biofilm formation, including initial bacterial adhesion, subsequent development, and final maturation. Herein, the construction of a DNase‐mimetic artificial enzyme (DMAE) for anti‐biofilm applications is described. By confining passivated gold nanoparticles with multiple cerium(IV) complexes on the surface of colloidal magnetic Fe₃O₄ /SiO₂ core/shell particles, a robust and recoverable artificial enzyme with DNase‐like activity was obtained, which exhibited high cleavage ability towards both model substrates and eDNA. Compared to the high environmental sensitivity of natural DNase in anti‐biofilm applications, DMAE exhibited a much better operational stability and easier recoverability. When DMAE was coated on substratum surfaces, biofilm formation was inhibited for prolonged periods of time, and the DMAE excelled in the dispersion of established biofilms of various ages. Finally, the presence of DMAE remarkably potentiated the efficiency of traditional antibiotics to kill biofilm‐encased bacteria and eradiate biofilms.     

Genetic and expression analysis of SNPs in the human deoxyribonuclease II: SNPs in the promoter region reduce its in vivo activity through decreased promoter activity

Five SNPs in the human DNase II gene have been reported to be associated with rheumatoid arthritis (RA). Genotype and haplotype analysis of 14 SNPs, nine SNPs of which reported in the NCBI dbSNP database in addition to these five SNPs, was performed in healthy subjects. The enzymatic activities of the amino acid substituted DNase II corresponding to each SNP and serum DNase II in healthy Japanese, and promoter activities derived from each haplotype of the RA‐related SNPs were measured. Significant correlations between genotype in each RA‐related SNP and enzymatic activity levels were found; alleles associated with RA exhibited a reduction in serum DNase II activity. Furthermore, the promoter activities of each reporter construct corresponding to predominant haplotypes in three SNPs in the promoter region of the gene exhibited significant correlation with levels of serum DNase II activity. These findings indicate these three SNPs could alter the promoter activity of DNASE2, leading to a decline in DNase II activity in the serum through gene expression. Since the three SNPs in the promoter region of the DNase II gene could affect in vivo DNase II activity through reduction of the promoter activity, it is feasible to identify these SNPs susceptible to RA.     

A Functional DNase I Coating to Prevent Adhesion of Bacteria and the Formation of Biofilm

Biofilms are detrimental in many industrial and biomedical applications and prevention of biofilm formation has been a prime challenge for decades. Biofilms consist of communities of adhering bacteria, supported and protected by extracellular‐polymeric‐substances (EPS), the so‐called “house of biofilm organisms”. EPS consists of water, proteins, polysaccharides and extracellular‐DNA (eDNA). eDNA, being the longest molecule in EPS, connects the different EPS components and therewith holds an adhering biofilm together. eDNA is associated with bacterial cell surfaces by specific and non‐specific mechanisms, mediating binding of other biopolymers in EPS. eDNA therewith assists in facilitating adhesion, aggregation and maintenance of biofilm structure. Here, a new method is described to prevent biofilm formation on surfaces by applying a DNase I enzyme coating to polymethylmethacrylate, using dopamine as an intermediate. The intermediate coupling layer and final DNase I coating are characterized by water‐contact‐angle measurements and X‐ray photoelectron‐spectroscopy. The DNase I coating strongly reduces adhesion of Staphylococcus aureus (95%) and Pseudomonas aeruginosa (99%) and prevents biofilm formation up to 14 h, without affecting mammalian cell adhesion and proliferation. Also agarose‐gel‐electrophoresis indicates loss of enzyme activity between 8 and 24 h. This duration however, is similar to many local antibiotic‐delivery devices, which makes it an ideal coating for biomaterial implants and devices, known to fail due to biofilm formation with disastrous consequences for patients and high costs to the healthcare system. With threatening increases in antibiotic resistance, the DNase I coating may provide a timely, potent new approach to biofilm prevention on biomaterial implants and devices.     

Introduction of Fluorometry to the Screening of Protein Crystallization Buffers

A system to use fluorometry for the search of protein crystallization buffers was developed. The screening of candidates was done with a use of short gel-filtration column (Sephacryl S-100 HR) linked to the fluorometer. Protein elution was monitored by intrinsic fluorescence or emission from its labels. This method was applied to actin and actin complexes. When nuclei were formed in actin solution, preceding the peak of actin, a new peak appeared on the elution curve. It was found that the fluorescence allows detection of even small amount of nuclei formed in the buffer. Using the screened buffers, crystal growths were attempted. The images of crystals were captured by fluorescence microscope. The monitoring of nuclei with this method will accelerate the screening of crystallization buffers. This system is applicable to the crystallization of other proteins and their complexes.     

Enhanced microfiltration of γ-globulin solution upon treatment of NaCl addition and/or DNase digestion

Microfiltration of a γ-globulin solution has been investigated through the virus removal membranes having different pore sizes (i.e. r=15, 35 and 75 nm) and a dialysis membrane (r=3.4 nm), which were all made of the same regenerated cellulose material. The addition of NaCl in the γ-globulin feed solution was effective to enhance the flux and transmission through the membranes having a pore size ranging from 15 to 75 nm. DNase treatment of a γ-globulin solution with Micrococcal nuclease enhanced the flux and transmission of γ-globulin through the membranes either with or without NaCl. The membranes having a pore size of 35 nm showed dramatically enhanced flux in the microfiltration of a γ-globulin solution containing NaCl and/or being treated with Micrococcal nuclease. This can be explained as a DNase treatment and NaCl addition in the protein solution dissociate protein aggregates of DNA–γ-globulin complex, which plugs the pores in the microfiltration membranes.     

基于DNAzyme的单链核酸酶活性研究

本文报道了一种基于DNAzyme的可视检测单链核酸酶活性的新方法.DNAzyme是一种具有类过氧化物酶活性的单链DNA分子,在H_2O_2存在下能够催化无色底物2,2′-连氮基-双-(3-乙基并二氢噻唑啉-6-磺酸)二价阴离子(ABTS~(2-))氧化成蓝绿色物质ABTS~-·5自由基.催化体系中单链核酸酶的加入能水解DNAzyme,导致被DNAzyme催化的ABTS~-·5减少,从而可以通过颜色变化和紫外-可见吸收光谱检测相应的单链核酸酶活性.以Dnase I和S1核酸酶作为单链核酸酶代表进行实验,实验结果表明对Dnase I检测的线性范围为0.5 ～5 U/mL,检出限为0.15 U/mL;对S1核酸酶检测的线性范围为1～10 U/mL,检出限为0.11 U/mL.该方法还能用于单链核酸酶抑制剂的检测,结果表明:Zn~(2+)对Dnase I的半数抑制浓度(Ic_(50))为56.4 mol/L,焦磷酸盐对S1核酸酶的Ic50为1.17 mmol/L.