Parametric multiple sequence alignment and phylogeny construction

Bounds are given on the size of the parameter-space decomposition induced by multiple sequence alignment problems where phylogenetic information may be given or inferred. It is shown that many of the usual formulations of these problems fall within the same integer parametric framework, implying that the number of distinct optima obtained as the parameters are varied across their ranges is polynomially bounded in the length and number of sequences.     

The aligned Si nanowires growth using MW plasma enhanced CVD

New and simple modification of vapor-liquid-solid process for Si nanowires growth based on microwave plasma enhanced chemical vapor deposition that uses solid-state Si target as a source of Si atoms was developed. The method was temperature and pressure controlled evaporation of solid phase of Si source in hydrogen microwave plasma. Aligned growth of Si nanowires was performed in local electric field by applying of constant negative bias to substrate holder. Deposited Si nanowires were studied by scanning electron microscopy (SEM), Raman and photoluminescence spectroscopy. Correlation between photoluminescence spectra and Si nanowires properties were studied.     

A mathematical analysis of a fish school model

A model proposed in the literature for fish schools of relatively large size is studied for mathematical and qualitative properties. Existence, uniqueness and positivity of solutions are established and bifurcation properties relative to diffusion and alignment parameters are studied.     

N(~4S)+NO(X~2II)→N_2(X~3Σ_g~-)+O(~3P)反应的立体动力学(英文)

采用准经典轨线方法研究了在不同碰撞能下,碰撞反应N(4S) NO(X2!)→N2(X3"g-) O(3P)在两个最低势能面3A″和3A′产物与反应物之间的矢量相关.结果表明,对于不同的碰撞能,在两个势能面上反应产物的转动取向展示了不同的特征和趋势.发生在3A″势能面上的反应主要由外平面机理支配,而发生在3A′势能面上的反应倾向于受内平面机理支配.这些差异来自于两个势能面的不同构型.     

圆片级封装的新颖对准技术

对于3D互连、圆片级封装(WLP)和先进的MEMS器件的圆片键合,精密对准是一项关键技术,不同的MEMS,常常包含双面加工处理,而IC和CMOS制造业则只利用单面加工处理步骤,因此,圆片到圆片的对准必须使用设置在键合界面(也就是面对面)中的对准标记。论述了面对面对准方法的主要步骤,最新结果报导,用一种特殊开发的对准系统获得了≤1μm的对准精度。设备主要是为圆片对圆片的对准和键合而设计。     

一种加权均方误差最小化的鲁棒性干扰对齐算法

线性干扰对齐的一个常见优化目标是总传输速率最大化,但因为和速率函数的非凸特性而难以直接求解。加权均方误差最小化算法借助均方误差与和速率之间的等价关系解决了这一问题。这一方法需要获得准确的信道状态信息,在实际应用中,通道估计误差的存在会导致算法性能的下降。该文提出一种改进算法,在干扰对齐预编码矩阵与接收矩阵的优化求解过程中将通道估计误差的统计特性考虑在内。仿真结果表明,相比以往的加权均方误差最小化算法,该文算法对信道估计误差具有较高的鲁棒性,可以有效提高总的传输速率。     

三小区环境中基于三角分解的低复杂度干扰对齐算法

针对3小区每小区2个边缘用户的MIMO下行链路,在不改变系统自由度的前提下对联合信道进行下三角分解得到系统的等效模型;在此基础上,根据不同小区受到的干扰不同,该文提出一种线性干扰对齐算法同时消除小区间干扰和小区内干扰。该算法利用联合信道分解可以先消除一半的小区间干扰,并根据不同小区的用户设计其干扰抑制矩阵,减少了用户端接收矩阵个数及相应处理,从而降低了接收端的复杂度。仿真表明,随着数据流的增加,系统容量和能量效率都有明显的提高,在自由度相同的情况下,天线数不同对系统容量和能量效率有较大影响。     

DNA序列比对数目的算法研究

生物序列比对是生物信息学中非常重要的内容.文[1]中作者用差分方程理论给出了求两DNA序列间比对数目的一个计算公式,然而解法较为繁琐.本文将借助于组合数学中母函数这一计数工具给出另一简单、优美的算法,并在此基础上剔除非生物比对,得到进一步的计算公式,这一结果缩小了需要考查的比对范围.     

Non-rigid landmark-based large-scale image registration in 3-D reconstruction of mouse and rat kidney nephrons

BackgroundSerial histological sections are suffering from mechanical distortions that disturb the reconstruction of 3-D objects. We have corrected such artifacts with a non-rigid landmark-based method that respects the original geometry in the tissue block. The method is exemplified on a large scale in the registration of semi-thin serial sections of the mouse and rat kidneys, and has been tested on FFPE-sections.AimIn this study of mouse and rat kidneys, we have measured and characterized the deformations introduced in the preparation of 2.5-μm-thick Epon sections and then eliminated them by a landmark-based non-rigid transformation (NRT).MethodsWe obtained 2.5-μm-thick serial Epon sections from three mouse kidneys and three rat kidneys for 3-D reconstruction of the nephron tubules. First, the images from 3000 serial mouse and 13,000 serial rat sections underwent a classic rigid registration (CRR), and the distortions were measured and indexed. The section images underwent a further NRT in order to compensate for the deformations. The NRT used is a classic interactive landmark-based approach. The quality of the NRT was verified by comparing the geometry of the transformed images with corresponding block images.ResultsAfter CRR, the 2.5-μm-thick sections had a linear deformation of up to 2%, the tubular lengths were overestimated with up to 1.5×, and it was most difficult to trace the tubules from section to section. After the additional NRT, the geometry of the images reflected the original geometry in the block, the tubular lengths were no longer overestimated, and the NRT highly facilitated the tracing of the tubular system.ConclusionsNRT has facilitated the tracing of the tubular system in kidneys, a tracing, which would otherwise have been most difficult to perform. NRT has yielded substantial new knowledge to segmental and spatial nephron organization in the mouse and rat kidneys.     

压印光刻中的两步对正技术

压印光刻中套刻需要粗、精两级对正.实验采用一对斜纹结构光栅作为对正标记.利用物镜组观察光栅标记图像的边界特征进行粗对正,其准确度在精对正信号的捕捉范围内;利用光电接收器件阵列组合接收光栅莫尔信号,在莫尔信号的线区进行精对正.由于线性区的斜率大, 精对正过程中得到相应x,y方向的对正误差信号灵敏度高,利用高灵敏度对正误差信号作为控制系统的驱动信号,对承片台进行驱动定位,实现精对正.最终使X,Y方向上的重复对正准确度分别达到了± 21 nm(± 3σ)和±24 nm(± 3σ).