Comprehensive Profiling by Non-targeted Stable Isotope Tracing Capillary Electrophoresis-Mass Spectrometry: A New Tool Complementing Metabolomic Analyses of Polar Metabolites

Mass spectrometry (MS) driven metabolomics is a frequently used tool in various areas of life sciences; however, the analysis of polar metabolites is less commonly included. In general, metabolomic analyses lead to the detection of the total amount of all covered metabolites. This is currently a major limitation with respect to metabolites showing high turnover rates, but no changes in their concentration. Such metabolites and pathways could be crucial metabolic nodes (e.g., potential drug targets in cancer metabolism). A stable-isotope tracing capillary electrophoresis–mass spectrometry (CE-MS) metabolomic approach was developed to cover both polar metabolites and isotopologues in a non-targeted way. An in-house developed software enables high throughput processing of complex multidimensional data. The practicability is demonstrated analyzing [U-¹³C]-glucose exposed prostate cancer and non-cancer cells. This CE-MS-driven analytical strategy complements polar metabolite profiles through isotopologue labeling patterns, thereby improving not only the metabolomic coverage, but also the understanding of metabolism.     

The AB2-XA1 electronic transition of NO2: A rovibronic survey covering 14 300-18 000 cm

More than 250 rotationally resolved vibrational bands of the A²B₂-X²A₁ electronic transition of ¹⁵NO₂ have been observed in the 14 300-18 000 cm⁻¹ range. The bands have been recorded in a recently constructed setup designed for high resolution spectroscopy of jet cooled molecules by combining time gated fluorescence spectroscopy and molecular beam techniques. The majority of the observed bands has been rotationally assigned and can be identified as transitions starting from the vibrational ground state or from vibrationally excited (hot band) states. An exceptionally strong band is located at 14 851 cm⁻¹ and studied in more detail as a typical benchmark transition to monitor ¹⁵NO₂ in atmospheric remote sensing experiments. Standard rotational fit routines provide band origins, rotational and spin rotation constants. A subset of 177 vibronic levels of ²B₂ vibronic symmetry has been analyzed in the energy range between 14 300 and 17 250 cm⁻¹, in terms of integrated density and using Next Neighbor Distribution. It is found that the overall statistical properties and polyad structure of ¹⁵NO₂ are comparable to those of ¹⁴NO₂ but that the internal structures of the polyads are completely different. This is a direct consequence of the X²A₁-A²B₂ vibronic mixing.     

High resolution electronic study of ONO, ONO and ONO: A rovibronic survey covering 11 800-14 380 cm

The 11 800-14 380 cm⁻¹ frequency range has been scanned for rotationally resolved rovibronic transitions in the A²B₂-X²A₁ electronic band system of the symmetric (C_2v) ¹⁶O¹⁴N¹⁶O and ¹⁸O¹⁴N¹⁸O isotopologues and in the corresponding electronic band system of the asymmetric (C_s) ¹⁸O¹⁴N¹⁶O isotopologue. The rotational analysis—reflecting minor differences in mass—in combination with symmetry induced spectral differences allows an identification of 68 ¹⁶O¹⁴N¹⁶O vibronic levels, 26 ¹⁸O¹⁴N¹⁸O vibronic levels and 51 ¹⁸O¹⁴N¹⁶O vibronic levels. The bands are recorded using near infrared fluorescence spectroscopy and a piezo valve based pulsed molecular beam expansion of premixed ¹⁸O₂ and ¹⁴N¹⁶O in Ar. The majority of the observed bands is rotationally assigned and can be identified as transitions starting from the vibrational ground state of one of the isotopologues. Numerous hot bands have also been identified. A comparison of the overall spectroscopic features of C_2v vs. C_s symmetric species provides qualitative information on symmetry dependence of vibronic couplings.     

Sensory Perception of Non-Deuterated and Deuterated Organic Compounds

The chemical background of olfactory perception has been subject of intensive research, but no available model can fully explain the sense of smell. There are also inconsistent results on the role of the isotopology of molecules. In experiments with human subjects it was found that the isotope effect is weak with acetone and D₆-acetone. In contrast, clear differences were observed in the perception of octanoic acid and D₁₅-octanoic acid. Furthermore, a trained sniffer dog was initially able to distinguish between these isotopologues of octanoic acid. In chromatographic measurements, the respective deuterated molecule showed weaker interaction with a non-polar liquid phase. Quantum chemical calculations give evidence that deuterated octanoic acid binds more strongly to a model receptor than non-deuterated. In contrast, the binding of the non-deuterated molecule is stronger with acetone. The isotope effect is calculated in the framework of statistical mechanics. It results from a complicated interplay between various thermostatistical contributions to the non-covalent free binding energies and it turns out to be very molecule-specific. The vibrational terms including non-classical zero-point energies play about the same role as rotational/translational contributions and are larger than bond length effects for the differential isotope perception of odor for which general rules cannot be derived.     

Global fittings of NNO and NNO vibrational-rotational line positions using the effective Hamiltonian approach

An effective Hamiltonian built up to sixth order in the Amat-Nielsen ordering scheme describing all rovibrational energy levels in the ground electronic state and containing in explicit form all resonance interaction terms due to the approximate relations between harmonic frequencies ω₁≈2ω₂ and ω₃≈4ω₂ was applied to model the observed rovibrational line positions (collected from the literature) of ¹⁴N¹⁵N¹⁶O and ¹⁵N¹⁴N¹⁶O isotopologues of nitrous oxide. For ¹⁴N¹⁵N¹⁶O, 124 effective Hamiltonian parameters were fitted to near 28 000 observed line positions covering the 0.8-8860 cm⁻¹ spectral range. The RMS of the weighted fit is 0.00126 cm⁻¹ and dimensionless standard deviation is 1.48. For ¹⁵N¹⁴N¹⁶O, 121 effective Hamiltonian parameters were fitted to more than 31 000 observed line positions covering the same spectral interval. The RMS of the weighted fit is 0.00185 cm⁻¹ and dimensionless standard deviation is 1.85. In both cases the models describe all available line positions with precision compatible to the measurement uncertainties. A number of local resonance perturbations was found and discussed. Among these perturbations there are interpolyad resonance Coriolis interactions. A comparison of HITRAN-2008 data with the calculations based on the fitted models is presented.     

Rate coefficients for reactions of OH radicals with CH3D,CH2D2, CHD3, and CD4

Fourier transform infrared (FTIR) smog chamber techniques were used to investigate the atmospheric chemistry of the isotopologues of methane. Relative rate measurements were performed to determine the kinetics of the reaction of the isotopologues of methane with OH radicals in cm³ molecule⁻¹ s⁻¹ units: k(CH₃D + OH) = (5.19 ± 0.90) × 10⁻¹⁵, k(CH₂D₂ + OH) = (4.11 ± 0.74) × 10⁻¹⁵, k(CHD₃ + OH) = (2.14 ± 0.43) × 10⁻¹⁵, and k(CD₄ + OH) = (1.17 ± 0.19) × 10⁻¹⁵ in 700 Torr of air diluent at 296 ± 2 K. Using the determined OH rate coefficients, the atmospheric lifetimes for CH_4–xD_x (x = 1–4) were estimated to be 6.1, 7.7, 14.8, and 27.0 years, respectively. The results are discussed in relation to previous measurements of these rate coefficients.     

Does Perdeuteration Increase the Polarity of Janus Face Cycloalkanes?

Stimulated by a suggestion of the late Professor Jack D. Dunitz, that perdeuterated Janus face cycloalkanes may be more polar than their unlabelled forms, the deuterated isotopologue of all cis-1,2,3,4,5,6-hexafluorocyclohexane ([²H₆]- 1a ) and all cis-1,2,3,4-tetrafluorocyclopentane ([²H₆]- 3a ) were prepared. Computation at the B3LYP−D3 level indicated that [²H₆]- 1a is not more polar than its protio form 1, however perdeuterated cyclopentane [²H₆]- 3a may indeed be more polar than 3 , although the magnitude is predicted to be small. None-the-less retention time analysis on a reverse phase GC/MS column of an add-mix of 3 and [²H₆]- 3a gave some indication that the per-deuterated isotopologue 3a was detected marginally before the unlabelled compound consistent with increased polarity associated with perdeuteration.     

Fundamental vibrational frequencies and spectroscopic constants for the methylperoxyl radical,CH3O2, and related isotopologues 13CH3OO,CH3 18O18O,and CD3OO

Accurate spectroscopic and geometric constants for CH₃O₂, and its isotopologues ¹³CH₃OO, CH₃ ¹⁸O¹⁸O and CD₃OO, are predicted. Employing coupled cluster theory with single, double, and perturbative triple excitations [CCSD(T)], we obtain optimized equilibrium geometries using Dunning's cc-pVTZ basis set. A Taylor expansion of the potential energy surface, including all third-order and semidiagonal fourth-order terms in a basis of normal coordinates, yields anharmonic vibrational frequencies and vibrationally-averaged properties including the effects of anharmonicity. We detail the strong influence of Fermi resonances on the problematic ν₆ vibrational mode of CD₃OO, arriving at a value of 993?cm^?1; two previous experimental measurements of this mode appear to have been incorrectly assigned. Our computed energies for the low intensity ν₁₁ transition are in excellent agreement with experimental measurements performed for CH₃ ¹⁸O¹⁸O and CD₃OO, inspiring confidence that our results will serve as a guide for experimental measurement of this yet-unobserved quantity for the CH₃OO and ¹³CH₃OO isotopologues. Given the reliability of our force field, and considering the results of other experiments, we make a number of reassignments to previously recorded spectra, which eliminate large disagreements between experimental observations. The vibrational averaging of the rotational constants and geometries are also discussed for each isotopologue.     

A Gas Chromatography‐Molecular Rotational Resonance Spectroscopy Based System of Singular Specificity

We designed and demonstrated the unique abilities of the first gas chromatography–molecular rotational resonance spectrometer (GC‐MRR). While broadly and routinely applicable, its capabilities can exceed those of high‐resolution MS and NMR spectroscopy in terms of selectivity, resolution, and compound identification. A series of 24 isotopologues and isotopomers of five organic compounds are separated, identified, and quantified in a single run. Natural isotopic abundances of mixtures of compounds containing chlorine, bromine, and sulfur heteroatoms are easily determined. MRR detection provides the added high specificity for these selective gas‐phase separations. GC‐MRR is shown to be ideal for compound‐specific isotope analysis (CSIA). Different bacterial cultures and groundwater were shown to have contrasting isotopic selectivities for common organic compounds. The ease of such GC‐MRR measurements may initiate a new era in biosynthetic/degradation and geochemical isotopic compound studies.