A finite volume cell‐centered Lagrangian hydrodynamics approach for solids in general unstructured grids

A finite volume cell‐centered Lagrangian hydrodynamics approach, formulated in Cartesian frame, is presented for solving elasto‐plastic response of solids in general unstructured grids. Because solid materials can sustain significant shear deformation, evolution equations for stress and strain fields are solved in addition to mass, momentum, and energy conservation laws. The total stress is split into deviatoric shear stress and dilatational components. The dilatational response of the material is modeled using the Mie‐Grüneisen equation of state. A predicted trial elastic deviatoric stress state is evolved assuming a pure elastic deformation in accordance with the hypo‐elastic stress‐strain relation. The evolution equations are advanced in time by constructing vertex velocity and corner traction force vectors using multi‐dimensional Riemann solutions erected at mesh vertices. Conservation of momentum and total energy along with the increase in entropy principle are invoked for computing these quantities at the vertices. Final state of deviatoric stress is effected via radial return algorithm based on the J‐2 von Mises yield condition. The scheme presented in this work is second‐order accurate both in space and time. The suitability of the scheme is evinced by solving one‐ and two‐dimensional benchmark problems both in structured grids and in unstructured grids with polygonal cells. Copyright © 2013 John Wiley & Sons, Ltd.     

A vertex‐centered linearity‐preserving discretization of diffusion problems on polygonal meshes

This paper introduces a vertex‐centered linearity‐preserving finite volume scheme for the heterogeneous anisotropic diffusion equations on general polygonal meshes. The unknowns of this scheme are purely the values at the mesh vertices, and no auxiliary unknowns are utilized. The scheme is locally conservative with respect to the dual mesh, captures exactly the linear solutions, leads to a symmetric positive definite matrix, and yields a nine‐point stencil on structured quadrilateral meshes. The coercivity of the scheme is rigorously analyzed on arbitrary mesh size under some weak geometry assumptions. Also, the relation with the finite volume element method is discussed. Finally, some numerical tests show the optimal convergence rates for the discrete solution and flux on various mesh types and for various diffusion tensors. Copyright © 2015 John Wiley & Sons, Ltd.     

Doubling Förster Resonance Energy Transfer Efficiency in Proteins with Extrinsic Thioamide Probes: Implications for Thiomodified Nucleobases

Designing a potential protein–ligand pair is pivotal, not only to track the protein structure dynamics, but also to assist in an atomistic understanding of drug delivery. Herein, the potential of a small model thioamide probe being used to study albumin proteins is reported. By monitoring the Förster resonance energy transfer (FRET) dynamics with the help of fluorescence spectroscopic techniques, a twofold enhancement in the FRET efficiency of 2-thiopyridone (2TPY), relative to that of its amide analogue, is observed. Molecular dynamics simulations depict the relative position of the free energy minimum to be quite stable in the case of 2TPY through noncovalent interactions with sulfur, which help to enhance the FRET efficiency. Finally, its application is shown by pairing thiouracils with protein. It is found that the site-selective sulfur atom substitution approach and noncovalent interactions with sulfur can substantially enhance the FRET efficiency, which could be a potential avenue to explore in the design of FRET probes to study the structure and dynamics of biomolecules.     

Ligand-ligand redox interaction through some metal-cluster units

The ligand-ligand redox interaction separated by di-, tri-, and hexanuclear cluster units is discussed in terms of the splitting of the redox waves (DeltaE(L)) and the comproportionation constants (Kcom(L)) of the ligand-based mixed valence state. Although two redox-active monodentate ligands in the mononuclear ruthenium(II) complexes (either cis or trans configurations) do not show appreciable splitting in their reduction waves, interestingly those separated by giant triruthenium and hexarhenium cluster units clearly show splitting. The molecular orbital considerations in the literature suggest that these units possess some pi-type molecular orbitals composed of metal dpi and possibly ligand ppi orbitals. Absence of the redox interactions in oxo-bridged diruthenium(II) and oxo-centered trirhodium(III) complexes where such pi molecular orbitals (including an antibonding one) are fully occupied, indicates the importance of empty pi* orbitals for the ligand redox communication.     

DFT studies of ESR parameters for N?O centered radicals,N‐alkoxyaminyl and aminoxyl radicals

Theoretical calculations of ESR parameters for aminoxyl radicals have been widely studied using the density functional theory (DFT) calculations. However, the isomer N‐alkoxyaminyl radicals have been limitedly studied. With the use of experimental data for 46 N‐alkoxyaminyl and 38 aminoxyl radicals, the isotropic ¹⁴N hyperfine coupling constants (a_N) and g‐factors have been theoretically estimated by several DFT calculations. The best calculation scheme of a_N for N‐alkoxyaminyl radicals was PCM/B3LYP/6‐31 + + G(d,p) (R² = 0.9519, MAE = 0.034 mT), and that for aminoxyl radicals was PCM/BHandHLYP/6‐31 + + G(3df,3pd) (R² = 0.9336, MAE = 0.057 mT). For aminoxyl radicals, the solvation models in calculations enhanced the accuracy of reproducibility. In contrast, for N‐alkoxyaminyl radicals the calculations with solvation models provided no improvement. The differences in the best functionals between two types of radicals were thought to come from the contribution ratios of neutral and dipolar canonical structures in resonance forms. The a_N for N‐alkoxyaminyl radicals that were stabilized by small contribution of dipolar canonical structures could be precisely reproduced by B3LYP with only 20% HF exact exchange. In contrast, the a_N for aminoxyl radicals stabilized by large contribution of dipolar canonical structures was well reproduced by BHandHLYP with 50% HF exchange. The best calculation scheme of g‐factors was IEFPCM/B3LYP/6‐31 + G(d,p) (R² = 0.9767, MAE = 0.0001) for not only aminoxyl but also N‐alkoxyaminyl radicals. Copyright © 2011 John Wiley & Sons, Ltd.     

大学物理教学改革实践浅析——“问题导向”式学习的意义及应用

针对当前我国高校大学物理教学中存在诸多问题的现状,提出"问题导向"式教学的解决途径."问题导向"学习中"教"与"学"的方式有较大跨度的转变,它以学生为中心,以问题为导向,其中问题的设置环节对师生良好互动的实现至关重要.文章就振动内容问题的设计和提出进行简单应用尝试,以期为后续大学物理教学改革的持续进行提供帮助.     

几类最优避免冲突码

长度为n重量为w的避免冲突码C是群Z_n的w元子集族,满足对任意的x,y∈C,x≠y有d*(x)∩d*(y)=Φ,其中d*(x)={a-b(mod n):a,b∈x,a≠b}.避免冲突码适用于无反馈时隙同步多址冲突信道.C中的元素称为码字,C中所包含的码字的个数称为码的容量,它是系统中所支持的潜在用户的个数.利用已有的3种构造方法给出了重量在4到10之间的一些最优CAC(p,w)码类.     

An aspect ratio agglomeration multigrid for unstructured grids

A robust aspect ratio‐based agglomeration algorithm to generate high quality of coarse grids for unstructured and hybrid grids is proposed in this paper. The algorithm focuses on multigrid techniques for the numerical solution of Euler and Navier–Stokes equations, which conform to cell‐centered finite volume special discretization scheme, combines vertex‐based isotropic agglomeration and cell‐based directional agglomeration to yield large increases in convergence rates. Aspect ratio is used as fusing weight to capture the degree of cell convexity and give an indication of cell stretching. Agglomeration front queue is established to propagate inward from the boundaries, which stores isotropic vertex and also high‐stretched cell marked with different flag according to aspect ratio. We conduct the present method to solve Euler and Navier–Stokes equations on unstructured and hybrid grids and compare the results with single grid as well as MGridGen, which shows that the present method is efficient in reducing computational time for large‐scale system equations. Copyright © 2013 John Wiley & Sons, Ltd.