Thermodynamic and Computational (DFT) Study of Non-Covalent Interaction Mechanisms of Charge Transfer Complex of Linagliptin with 2,3-Dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) and Chloranilic acid (CHA)

This study describes the non-covalent interactions of the charge transfer complex (CT), which was responsible for the synthesis of Linagliptin (LNG) with 2,3-Dichloro-5,6-Dicyano-1,4-benzoquinone (DDQ), or with Chloranilic acid (CHA) complexes in acetonitrile (MeCN) at temperatures of (25 ± 2 °C). Then, a UV–Vis spectrophotometer was utilized to identify Linagliptin (LNG) from these complexes. For the quantitative measurement of Linagliptin in bulk form, UV–Vis techniques have been developed and validated in accordance with ICH criteria for several aspects, including selectivity, linearity, accuracy, precision, LOD, LOQ, and robustness. The optimization of the complex synthesis was based on solvent polarization; the ratio of molecules in complexes; the association constant; and Gibbs energy (ΔG°). The experimental work is supported by the computational investigation of the complexes utilizing density functional theory as well as (QTAIM); (NCI) index; and (RDG). According to the optimized conditions, Beer’s law was observed between 2.5–100 and 5–100 µM with correlation coefficients of 1.9997 and 1.9998 for LGN-DDQ and LGN-CHA complexes, respectively. For LGN-DDQ and LGN-CHA complexes, the LOD and LOQ were (1.0844 and 1.4406 μM) and (3.2861 and 4.3655 μM), respectively. The approach was successfully used to measure LGN in its bulk form with high precision and accuracy.     

A Comprehensive Study of N-Butyl-1H-Benzimidazole

Imidazole derivatives have found wide application in organic and medicinal chemistry. In particular, benzimidazoles have proven biological activity as antiviral, antimicrobial, and antitumor agents. In this work, we experimentally and theoretically investigated N-Butyl-1H-benzimidazole. It has been shown that the presence of a butyl substituent in the N position does not significantly affect the conjugation and structural organization of benzimidazole. The optimized molecular parameters were performed by the DFT/B3LYP method with 6-311++G(d,p) basis set. This level of theory shows excellent concurrence with the experimental data. The non-covalent interactions that existed within our compound N-Butyl-1H-benzimidazole were also analyzed by the AIM, RDG, ELF, and LOL topological methods. The color shades of the ELF and LOL maps confirm the presence of bonding and non-bonding electrons in N-Butyl-1H-benzimidazole. From DFT calculations, various methods such as molecular electrostatic potential (MEP), Fukui functions, Mulliken atomic charges, and frontier molecular orbital (HOMO-LUMO) were characterized. Furthermore, UV-Vis absorption and natural bond orbital (NBO) analysis were calculated. It is shown that the experimental and theoretical spectra of N-Butyl-1H-benzimidazole have a peak at 248 nm; in addition, the experimental spectrum has a peak near 295 nm. The NBO method shows that the delocalization of the aσ-electron from σ (C1–C2) is distributed into antibonding σ* (C1–C6), σ* (C1–N26), and σ* (C6–H11), which leads to stabilization energies of 4.63, 0.86, and 2.42 KJ/mol, respectively. Spectroscopic investigations of N-Butyl-1H-benzimidazole were carried out experimentally and theoretically to find FTIR vibrational spectra.     

PH2X与五元杂环体系磷键相互作用的理论研究

用MP2/aug-cc-pVDZ方法计算了PH2X(X=H,F,Cl,Br)与五元杂环化合物(吡咯、呋喃、噻吩)的相互作用,经完全均衡校正法校正基组重叠误差.在MP2/aug-cc-pVDZ优化基础上采用Gaussian 03程序包中的NBO程序计算了二级微扰稳定化能(ΔE2),并运用AIM 2000程序对其AIM性质进行了计算.为了进一步加强对该类相互作用的认识,应用约化密度梯度(RDG)填色等值面图和电子密度差图对代表性的体系进行了图形化分析.研究表明:PH3与三个五元杂环化合物形成的是P—H…π氢键相互作用;PH2X(X=F,Cl,Br)与五元杂环化合物形成磷键相互作用,这些磷键体系存在π型和n型两种形式的磷键相互作用,前者形成复合物的稳定性高于后者,并且相互作用大小与磷原子到杂环质心的矢量和P—X方向矢量的夹角密切相关.作为比较,我们对PCl3与这三种杂环化合物之间的相互作用也进行了研究,结果发现,PCl3分子中沿Cl—P键的P端出现了三个正的静电势区域或称作"σ-hole",因此其与杂环化合物形成的是分子间多磷键复合物.AIM拓扑分析表明磷键相互作用的本质属于闭壳层静电相互作用,且电子密度与复合物稳定性呈正相关.RDG图形化分析揭示了磷键相互作用所在的空间位置以及相对强度.DDF分析表明,磷键相互作用的存在使磷原子端基的电子密度减少,而沿着P—X轴以及五元杂环分子的电子密度增加,从而直观地体现了形成复合物后电子密度的重排情况.     

Spectral characterizations,molecular docking analysis and quantum computational calculations of 4-hydroxy-3-nitrobenzaldehyde

The FT-IR, FT-Raman, UV–Vis and NMR spectra of 4-Hydroxy-3-nitrobenzaldehyde (4H3NB) were examined by the hybrid correlation approach. B3LYP method with 6–311++G(d,p) basis set were utilised to obtain the ideal molecule form, vibrational wavenumbers, Raman activities and infrared intensities. The vibrational spectra's detailed interpretation was to be provided by the MOLVIB software. Bonding orbitals participate in all stages of natural bond orbital (NBO) analysis as donors and acceptors, which stabilises molecules through intermolecular charge transfer. Electron localization function (ELF) and localised orbital locator (LOL) maps were used to create 4H3NB and have topological properties. The title molecule's interactions were examined via reduced density gradient (RDG) evaluation. Molecular docking research was used to foreseen the binding interactions of 4H3NB derivative with the estrogen receptor 4-hydroxybenzaldehyde. Auto-dock software was used to conduct receptor-ligand docking investigation. According to the molecular docking results, the highest mean negative binding affinity (−6.718 kcal/mol) was exhibited by the current chemical.     

[AuI4]——RDG+缔合物纳米微粒体系的共振散射增强与荧光猝灭

减色效应;[AuI4]--RDG+缔合物纳米微粒体系的共振散射增强与荧光猝灭     

N2在页岩干酪根上的吸附特征

采用密度泛函理论的wB97XD方法、RDG函数方法和counterpoise correction理论,研究氮气在干酪根C₂₈H₁₄O和氮掺杂干酪根C₂₇H₁₄ON上的吸附特征。结果表明：N₂在干酪根上的活性吸附位点为苯环上方中心位置,吸附能在8~10 kJ·mol^-1之间,N₂和干酪根之间的相互作用主要是范德华相互作用和空间排斥作用。氮掺杂改变了干酪根的构型和电子云分布,导致含氮杂环不再是稳定的活性吸附位点,增强了排斥作用,使吸附能略有减小。研究结果对理解干酪根吸附小分子的特征有重要意义,能够为页岩气的开采提供理论支持。     

(PtI6-2RDG)n缔合纳米微粒体系的共振散射、荧光猝灭和减色效应研究

在0.02mol/L HCl介质中，罗丹明6G（RDG）分别在530nm和550nm处有一个吸收峰和荧光峰，PtI6^2-与RDG^ 主要通过静电引力形成疏水性的PtI6-2RDG缔合物分子。PtI6-2RDG分子间存在较强的分子和和疏水作用力而生成（PtI6-2RDG)n缔合纳米微粒，其粒径为40nm，在400nm、470nm和590nm产生3个共振散射，其中400nm和590nm处的2个峰为其特征共振散射峰，550nm荧光峰和530nm吸收峰的降低是由于纳米微粒形成后，只有裹露在（PtI6-2RDG)n纳米微粒界面的RDG荧光分子才能吸收激发光子跃迁到激发态，进而返回基态产生荧光，而体体相的RDG荧光分子无法与激发光作用产生荧光，即与激发光作用的RDG分子数大为降低。当该纳米微粒体系加入乙醇后，由于乙醇致使（PtI6-2RDG)n纳米微粒分解为PtI6-2RDG分子，体系的红紫色和共振散射峰消失，吸收峰和荧光峰恢复，研究结果表明，红紫色（PtI6-2RDG)n纳米微粒的形成是其共振散射增强、荧光猝灭、减色效应和产生特征共振散射峰的根本原因。     

Theoretical explanation for the DNA cleavage by GO with cation: anti-cooperativity effect among the π⋯π, cation⋯π/σ and H-bonding interactions in cytosine⋯GO⋯Mn+ (Mn+ = Na+, Mg2+, Al3+)

In order to reveal the nature of DNA cleavage by inorganic intercalator GO (graphene oxide) with cation, the cooperativity effects among the π?π, cation?π/σ and H-bonding interactions were evaluated in the cytosine?GO?Mⁿ⁺ (Mⁿ⁺?=?Na⁺, Mg²⁺, Al³⁺) model systems using the M06-2X, MP2 and ω B97X-D methods with the 6-311++G(2d,p) and 6-311++G(3df,3pd) basis sets. The Mⁿ⁺?O (ether) and N–H?O interactions induce the formation of the π?π stacking between cytosine and GO, and the anti-cooperativity effect are dominant in controling of the aggregation process of cytosine, GO and Mⁿ⁺, which was confirmed by the AIM (atoms-in-molecules) and RDG (reduced density gradient) analyses. Furthermore, the solvent effects of H₂O weaken greatly the anti-cooperativity effects. Thus, a deduction on the DNA cleavage by GO?cation with the intercalation mode is put forward: due to the anti-cooperativity effect and solvent effect, the π?π stacking is weakened in the complexes with Na⁺ or broken in those with Mg²⁺ or Al³⁺. Then the GO?Mg²⁺ moiety is squeezed out from the intercalating sites, leading to an invalid cleavage of DNA, while Na⁺ or Al³⁺ is bound tightly to cytosine, with a notable DNA cleavage. This deduction was used to explain reasonably the previous experimental phenomena.     

带有锥度结构的同轴开槽布拉格反射器研究

本文提出在Kα波段圆柱过模结构绕射辐射器件(RDG)中引入一种带有锥度结构的同轴内开槽布拉格反射器.采用复功率守恒技术(CCPT)对该反射器的频率响应特性进行分析.研究了相位匹配段长度,波纹槽深及锥度对反射器频率响应特性的影响,分析了波纹初始相位对反射器选模特性的影响,发现该反射器具有良好的模式选择特性.本文的研究工作为同轴Bragg反射器结构的研究提供了重要的理论分析手段. 关键词： 同轴Bragg反射器 频率响应特性 复功率守恒 绕射辐射振荡器     

镁卟啉与氮、氧杂环化合物的相互作用

以镁卟啉为主体化合物,模拟了生物体内常见的氮、氧杂环客体与主体化合物之间的相互作用.研究结果表明:镁卟啉与氮、氧杂环化合物的相互作用引起了镁卟啉中的镁原子与卟吩环不共面,且二面角越小不共面程度越大.自然键轨道(NBO)理论分析表明氮、氧孤对电子和金属镁的空孤对轨道的相互作用对复合物的稳定性贡献很大.使用约化密度梯度(RDG)函数等值面图和散点图可视化分析了配位相互作用和周边氢键作用的位置及强度.概念密度泛函(DFT)理论参数表明所形成的复合物比主体化合物的热力学稳定性小而反应活性高.芳香性计算表明含氧杂环客体与主体的相互作用使复合物中的卟吩环具有反芳香性,而含氮杂环客体与主体的相互作用使复合物中卟吩环呈现区域性芳香性.