ENDOR spectroscopic and molecular orbital study of the dynamical properties of the side chain in radical anions of ubiquinones Q-1, Q-2, Q-6, and Q-10

The dynamics of the side chain of the radical anions of ubiquinones Q-1 (2,3-dimethoxy-5-methyl-6-[3-methyl-2-butenyl]-1,4-benzoquinone), Q-2, Q-6, and Q-10 have been investigated using electron nuclear double-resonance (ENDOR) spectroscopy. When radicals are produced in the liquid phase, secondary radicals are also formed. The EPR spectra of these additional radicals overlap with the radical of interest. ENDOR spectroscopy was found to be capable for studying the dynamical properties of such conditions. The temperature dependence of the isotropic hyperfine coupling constants of the beta- and gamma-protons of the side chain was measured. The activation energy of the rotation and other dynamical properties of the side chain were calculated assuming that rotation can be modeled by the classical two-jump model. The rotation energy barrier for Q-1 was also determined by the hybrid Hartree-Fock/density functional method UB3LYP with the 6-31G(d) basis set. Calculated results were in good agreement with the experimental results. Despite the numerous parameters affecting the ENDOR linewidth ENDOR spectroscopy was shown to be a potential method for studying the dynamical properties of the mixtures of the radicals. Prominent forbidden transitions appear in the ENDOR spectra when alkali ions are present in the sample. From these transitions measured ENDOR-induced EPR spectra showed an additional doublet and phase transition in electron Zeeman frequency.     

Capillary electrophoresis-mass spectrometry of intact basic proteins using Polybrene-dextran sulfate-Polybrene-coated capillaries: System optimization and performance

A capillary electrophoresis-mass spectrometry (CE-MS) method using sheath liquid electrospray ionization interfacing was studied and optimized for the analysis of intact basic proteins. To prevent protein adsorption, capillaries with a noncovalent positively charged coating were utilized. Capillaries were coated by subsequent rinsing with solutions of Polybrene, dextran sulfate and Polybrene. The coating proved to be fully compatible with MS detection, causing no background signals and ionization suppression. The composition of the sheath liquid and BGE was optimized using the model proteins α-chymotrypsinogen A, ribonuclease A, lysozyme and cytochrome c. A sheath liquid of isopropanol-water-acetic acid (75:25:0.1, v/v/v) at 2 μL min⁻¹ resulted in optimal signal intensities for most proteins, but caused dissociation of the heme group of cytochrome c. Optimum protein responses were obtained with a BGE of 50 mM acetic acid (pH 3.0), which allowed a baseline separation of the test protein mixture. Several minor impurities present in the mixture could be detected and provisionally identified using accurate mass and a protein modification database. The selectivity of the CE-MS system was investigated by the analysis of acetylated lysozyme. Eight highly related species, identified as non-acetylated lysozyme and lysozyme acetylated in various degrees, could be distinguished. The CE-MS system showed good reproducibility yielding interday (three weeks period) RSDs for migration time and peak area within 2% and 10%, respectively. With the CE-MS system, determination coefficients (R²) for protein concentration and peak area were higher than 0.996, whereas detection limits were between 11 and 19 nM.     

Investigation of hydroxyl-mediated spectral interference from easily ionized elements in laser-enhanced ionization spectrometry in the 281–285 nm range

The spectral background from 281 to 285 nm in the laser-enhanced ionization (LEI) spectrum of aqueous samples containing easily ionized elements (EIE) at concentrations similar to those found in blood was investigated. A complex, structured spectral background was observed, which appears in the presence of Na or K, but does not match the spectral signature of either element. The same behavior was also observed for Li. It was established that this background originates from an energy transfer between laser-excited hydroxyl (OH) molecules and ground-state EIEs. The intensity of this spectral feature was found to increase with EIE concentration and applied electrode voltage. This unexpected source of spectral interference may complicate the determination of trace metals by LEI in the presence of EIEs, since it can not be prevented by simply avoiding interference from atomic lines.     

Highly sensitive capillary electrophoresis-mass spectrometry for rapid screening and accurate quantitation of drugs of abuse in urine

The combination of capillary electrophoresis (CE) and mass spectrometry (MS) is particularly well adapted to bioanalysis due to its high separation efficiency, selectivity, and sensitivity; its short analytical time; and its low solvent and sample consumption. For clinical and forensic toxicology, a two-step analysis is usually performed: first, a screening step for compound identification, and second, confirmation and/or accurate quantitation in cases of presumed positive results. In this study, a fast and sensitive CE-MS workflow was developed for the screening and quantitation of drugs of abuse in urine samples. A CE with a time-of-flight MS (CE-TOF/MS) screening method was developed using a simple urine dilution and on-line sample preconcentration with pH-mediated stacking. The sample stacking allowed for a high loading capacity (20.5% of the capillary length), leading to limits of detection as low as 2 ng mL⁻¹ for drugs of abuse. Compound quantitation of positive samples was performed by CE-MS/MS with a triple quadrupole MS equipped with an adapted triple-tube sprayer and an electrospray ionization (ESI) source. The CE-ESI-MS/MS method was validated for two model compounds, cocaine (COC) and methadone (MTD), according to the Guidance of the Food and Drug Administration. The quantitative performance was evaluated for selectivity, response function, the lower limit of quantitation, trueness, precision, and accuracy. COC and MTD detection in urine samples was determined to be accurate over the range of 10–1000 ng mL⁻¹ and 21–1000 ng mL⁻¹, respectively.     

Computational Investigation on the Ethylene-induced Esterase from Citrus Sinensis

In order to understand the interaction between ethylene-induced esterase(EIE, EC 3.1.1.) from Citrus sinensis and α-naphthyl acetate, a 3D model of EIE was generated based on the crystal structure of the tobacco salicylic acid binding protein 2(SABP2). With the aid of the molecular mechanics and molecular dynamics methods, the final refined model was obtained and its reliability was further assessed. In this study, the docking results show that the main-chain amide of residue His85 and residue Val18 can form hydrogen bonds to the carbonyl oxygen group of α-naphthyl acetate. MM-PBSA method was applied to calculating the binding free energy between EIE mutants and α-naphthyl acetate. Our calculated binding free energy of each of the two mutant complexes is increased compared with that of the one of the wild type, which is unfavorable to the reaction. It is well consistent with the experimental data. The above results clearly indicate that His85 and Val18 in EIE function as the oxyanion role and take part in the catalytic reaction. The new structural insights obtained from this computational study are expected to stimulate further biochemical studies on the structures and mechanisms of EIE and other members of the plant α/β hydrolases.