Syntheses and structures of six compounds in the A2LiMS4 (A=K, Rb, Cs; M=V, Nb, Ta) family

Six new compounds in the A₂LiMS₄ (A=K, Rb, Cs; M=V, Nb, Ta) family, namely K₂LiVS₄, Rb₂LiVS₄, Cs₂LiVS₄, Rb₂LiNbS₄, Cs₂LiNbS₄, and Rb₂LiTaS₄, have been synthesized by the reactions of the elements in Li₂S/S/A₂S₃ (A=K, Rb, Cs) fluxes at 773 K. The A and M atoms play a role in the coordination environment of the Li atoms, leading to different crystal structures. Coordination numbers of Li atoms are five in K₂LiVS₄, four in A₂LiVS₄ (A=Rb, Cs) and Cs₂LiNbS₄, and both four and five in Rb₂LiMS₄ (M=Nb, Ta). The A₂LiVS₄ (A=Rb, Cs) structure comprises one-dimensional chains of tetrahedra. The Rb₂LiMS₄ (M=Nb, Ta) structure is composed of two-dimensional layers. The Cs₂LiNbS₄ structure contains one-dimensional chains that are related to the Rb₂LiMS₄ layers. The K₂LiVS₄ structure contains a different kind of layer.     

Semiempirical Molecular Orbital Studies of the Acylation Step in the Lipase‐Catalyzed Ester Hydrolysis

In this study, we present the results from the semiempirical molecular orbital calculations for the acylation step in the lipase‐catalyzed ester hydrolysis. The results reveal that the lowest energy path for the formation of the tetrahedral intermediate is for the serine residue of the catalytic triad to attack the substrate, followed by coupling heavy atom movement and proton transfer. The calculations of four active site models show that the cooperation of the aspartate group and the oxyanion hole is capable of lowering the activation energy by about 16 kcalmol^?1. Our results further suggest that the lipase‐catalyzed ester hydrolysis adopts the single proton transfer mechanism.     

Structurally Modelling the 2-His-1-Carboxylate Facial Triad with a Bulky N,N,O Phenolate Ligand

We present the synthesis and coordination chemistry of a bulky, tripodal N,N,O ligand, Im^Ph2NNO ^{t Bu} ( L ), designed to model the 2-His-1-carboxylate facial triad (2H1C) by means of two imidazole groups and an anionic 2,4-di-tert-butyl-subtituted phenolate. Reacting K-L with MCl₂ (M = Fe, Zn) affords the isostructural, tetrahedral non-heme complexes [Fe(L)(Cl)] ( 1 ) and [Zn(L)(Cl)] ( 2 ) in high yield. The tridentate N,N,O ligand coordination observed in their X-ray crystal structures remains intact and well-defined in MeCN and CH₂Cl₂ solution. Reacting 2 with NaSPh affords a tetrahedral zinc thiolate complex, [Zn(L)(SPh)] ( 4 ), that is relevant to isopenicillin N synthase (IPNS) biomimicry. Cyclic voltammetry studies demonstrate the ligand's redox non-innocence, where phenolate oxidation is the first electrochemical response observed in K-L , 2 and 4 . However, the first electrochemical oxidation in 1 is iron-centred, the assignment of which is supported by DFT calculations. Overall, Im^Ph2NNO ^{t Bu} provides access to well-defined mononuclear, monoligated, N,N,O-bound metal complexes, enabling more accurate structural modelling of the 2H1C to be achieved.     

Pseudoreceptor model for ryanodine derivatives at calcium release channels

This paper describes the generation of a pseudoreceptor model for ryanodine receptor (RyR) modulating ryanoids in rabbit skeletal muscle. For this purpose, the molecular modelling software PrGen was applied to correlate experimentally determined and calculated free energies of binding for a set of 15 ryanodine derivatives. The final model indicates a narrow cleft with hydrogen bond donor and acceptor capacities (represented by an Asn) as most crucial for binding the pyrrole carboxylate substituent at C3 of ryanodine. In addition, hydrophobic residues flank the aromatic pyrrole ring (Tyr, Phe, and Ile). Two of those residues (Tyr and Ile) interact with the 2-isopropyl moiety, which seems to contribute to binding. Opposite to the pyrrole locus, a second hydrophobic region (represented by a Leu) restricts ryanodine derivatives in their longitudinal axis and leads to the discrimination of equatorial and axial positioned methyl groups and of polar substituents at C9. Finally, a charged glutamate residue generates strong hydrogen bonding and electrostatic interactions with the hydroxyl groups at C10 and C15. For this binding-site model – composed of six amino acid residues – a correlation for the training set ligands of R = 0.99 (Q² = 0.975) and a root mean square (rms) deviation of 0.568 kcal/mol for the prediction of the binding energies of four test set ligands was obtained. Based on this pseudoreceptor model the putative topology of the real binding site of ryanoids will be discussed.     

丝氨酸蛋白酶中催化三元组内氢键的作用

为了探究丝氨酸蛋白酶催化效率的来源,本文分别研究了丝氨酸酶催化水解多肽CI2、MCTI-A和六肽(SUB)的过程中催化三元组内的氢键所起的作用. 首先采用QM/MM-MD方法计算了在酶-底物复合物和过渡态下组氨酸和天冬氨酸之间质子转移的自由能曲线. 结果表明低能垒氢键仅在CI2酰化反应的过渡态区域形成,而在MCTI-A和SUB酰化反应中均是正常氢键. 与MCTI-A相比,CI2和SUB体系中氢键强度在过渡态时显著增强,因此相应的酰化反应能垒明显降低. 过渡态区域形成的低能垒氢键显然有助于加速酰化反应,同时研究也表明正常氢键也有可能降低能垒. 氢键降低能垒的关键则在于过渡态下氢键强度的增加程度,而不是其是否生成了低能垒氢键. 本文为研究催化三元组间的氢键在丝氨酸蛋白酶中的作用提供了新思路,并有助于理解丝氨酸蛋白酶中催化三元组的催化机制.     

Reactivity with Amines of Bis(cyanamide) and Bis(cyanoguanidine) Complexes of the Iron Triad

Treatment of bis(cyanamide) [M(N≡CNEt₂)₂L₄](BPh₄)₂ and bis(cyanoguanidine) [M{N≡CN(H)C(NH₂)=NH}₂L₄](BPh₄)₂ complexes [M = Fe, Ru, Os; L = P(OEt)₃] with an excess of amine RNH₂ (R = nPr, iPr) affords mixed‐ligand complexes with cyanamide and amine [M(NH₂R)(N≡CNEt₂)L₄](BPh₄)₂ ( 1a – 5a ) and [M(NH₂R){N≡CN(H)C(NH₂)=NH}L₄](BPh₄)₂ ( 1b , 2b ). The complexes were characterized by spectroscopy and X‐ray crystal structure determination of [M(NH₂iPr)(N≡CNEt₂){P(OEt)₃}₄](BPh₄)₂ [M = Ru ( 3a ), Os ( 5a )].     

Biharmonic homogeneous hypersurfaces in compact symmetric spaces

In this paper, we study biharmonic hypersurfaces in Einstein manifolds. Then, we determine all the biharmonic hypersurfaces in irreducible symmetric spaces of compact type which are regular orbits of commutative Hermann actions of cohomogeneity one.     

Density functional studies of influences of Ni triad metals and solvents on oxidative addition of MeI to [M(CH3)2(NH3)2] complexes and C-C reductive elimination from [M(CH3)3(NH3)2I] complexes

Three metal square planar complexes of the type [M(CH₃)₂(NH₃)₂] (M = Ni, Pd, Pt), with a systematic variation in the metals, are chosen to investigating their S_N2-type oxidative addition reactions with methyl iodide by using the B3LYP levels of theory. The oxidative addition was found to take place via a transition state with a nearly linear arrangement of the I-CH₃-M moiety. Solvation effects in these oxidative addition reactions were also investigated. Considering the nature of the metal centre and solvation effects, the following conclusions emerge: (i) addition of MeI is exothermic for all three metals, and Pt is predicted to react with a much lower barrier than either Pd or Ni. The results describe that the MeI addition would be expected to be more favourable with the complex bearing the third-row metal (platinum) as compared to the other triad metals, nickel or palladium, in which case a more strongly bound MeI adduct is formed with a lower activation barriers and the reaction being more exothermic; (ii) the reaction is very difficult to occur in low polar solvents, such as benzene, due to the high barrier which is induced by dissociation of iodide anion from methyl group, but the reaction easily occurs in polar solvents, such as acetonitrile; this is attributed to the ability of polar solvents to solvate and therefore stabilize the related polar intermediate ion pair. Ethane reductive elimination from the M(VI) complexes fac-[M(CH₃)₃(NH₃)₂I] were also studied, indicating that the Ni(IV) and Pd(IV) complexes are very prone to undergo the reductive elimination while the Pt(IV) analogous is less reactive towards the reductive elimination. The results indicate that in contrast to the Me-Me reductive elimination, the S_N2 oxidative addition reaction of MeI to M(II) is much less sensitive to the nature of the metal centre, suggesting that the nucleophilicity of M(II) in [M(CH₃)₂(NH₃)₂] does not change significantly as one moves from M = Ni to Pt.     

On a generalization of duality triads

Some aspects of duality triads introduced recently are discussed. In particular, the general solution for the triad polynomials is given. Furthermore, a generalization of the notion of duality triad is proposed and some simple properties of these generalized duality triads are derived.     

Photoinduced Intramolecular Charge Transfer in Donor-acceptor Dyad and Donor-bridge-acceptor Triad

在fullerene-PBTDP-TPA三体体系中的光诱导的分子内电荷转移的实验基础上,分别利用密度泛函理论和含时密度泛函理论以及结合二维、三维实空分析方法对fullerene、PBTDP-TPA二体以及fullerene-PBTDP-TPA三体的基态和激发态的性质进行了理论研究．二维定点表象揭示了激发情况下电子和空穴的相干情况．三维跃迁矩阵展示了跃迁偶极矩的方向和强度,而且三维电荷差密度给出了光诱导的分子内电荷转移的方向和结果．同时,用二维和三维表象的方法对fullerene-PBTDP-TPA三体中光诱导的分子内电荷转移过程进行了验证,揭示了在给予者-桥-接收者三体分子体系中分子内激发时电荷转移的机制．除此之外,还发现直接从给予者到接收者超交换的分子内电荷转移极大地促进了给予者-桥-接收者三体分子体系内的电荷转移．