Independent development and validation of a novel six-color fluorescence multiplex panel including 61 diallelic DIPs and 2 miniSTRs for forensic degradation sample

Current forensic DNA profiles are obtained based on analyses of PCR product sizes or DNA sequence polymorphisms. Sometimes routine forensic analysis using short tandem repeat (STR) generates unsuccessful DNA testing result if the biological sample encountered is excessively degraded and low-template DNA. Herein, a new six-color fluorescence labeling system, including 59 autosomal diallelic deletion or insertion polymorphisms (DIPs), 2 miniSTRs, 2 Y-chromosome DIPs, and 1 Amelogenin gene with the amplicon sizes of less than 200 bp, was self-developed. According to the validation guidelines for DNA analysis methods formulated by the Scientific Working Group on DNA Analysis Methods, the validation studies have also been carried out for the multiplex system. This novel panel possessed the features of strong stability, high sensitivity, and good specificity, which was especially suitable for the forensic degraded and mixed sample detections. The cumulative power of exclusion and cumulative matching probability of the system were 0.9999978 and 9.833E-28, respectively, in Han Chinese in Hunan, China. Moreover, this system will be an effective new tool that can be independently applied to forensic personal identification and paternity testing in the populations from the East Asia region, even from the South Asia, America, and Europe regions. The system can also contribute to population phylogenetic affinity and genetic structure analyses among different populations.     

基于数字图像的土、岩和混凝土内部结构定量分析和力学数值计算的研究进展

土、岩及混凝土是一种内部结构极其复杂的材料,内部细观组成和结构决定了它们在外力作用下内部应力和应变等物理场的分布状态,在很大程度上控制了它们的宏观力学响应和破坏机理和过程。自1995年以来,数字图像处理技术作为一种材料细观空间结构及几何形态的精确量测和数字表述手段快速地被应用于沥青混凝土、水泥混凝土、土和岩体材料细观结构定量分析中来。本文在研究相关文献的基础上,分析和研究了数字图像技术在土、岩及混凝土内部结构定量分析和力学数值计算中的发展过程和研究成果,内容包括:单个骨料颗粒形态特征定量分析;土、岩和混凝土内部结构定量分析;岩体结构定量分析中的应用;基于数字图像处理的土、岩和混凝土细观结构力学计算。在此基础上,本文进一步对数字图像技术在岩土领域中的应用进展及未来的发展趋势进行了探讨,认为数字图像作为一种空间分布测量手段和数字表述方法使得它具有巨大的潜力,特别是在岩土领域的纵深发展过程中,它可能实现考虑细微观结构性的岩土力学和工程分析和预测的、新的方法和理论。     

MS-MS检测杀虫双根施后对棉籽的污染

杀虫双(Dimehypo)化学名:2-N,N-二甲基-1,3双硫代磺酸钠基丙烷,分子式C5H11NO6S4Na2,是我国自行研制成功的一种沙蚕毒系有机杀虫剂,中等毒性,对害虫有较强的触杀作用,并兼有一定的熏蒸作用。湖北省荆州市微生物研究所将杀虫双用于根施防治棉株红铃虫,证明有一定的效果。但是由于将杀虫双直接施于土壤,因而是否会因植株对农药的吸收而造成对棉籽的污染,进而影响消费者的食用安全,这是农业生态学中必须研究的问题。本研究报道了检测棉籽中杀虫双残毒的四极杆串联质谱(DIP-MS-MS)快速定性的分析方法。     

一种计算DIP芯片结温的热阻模型

本文建立了一种计算塑料DIP(双列直插式封装)芯片结温的解析热阻模型,该模型根据DIP封装结构的散热途径建立.模型中的每一热阻均能通过较为简单的解析式进行计算,这与采用实验或数值模拟方法计算热阻的其他模型不同.利用该模型计算得到的一种塑料DIP芯片的结温与数值模拟得到的结温误差在±10%以内.     

Comparison of the electronic structure of different perylene‐based dye‐aggregates

Aggregates of functionalized polycyclic aromatic molecules like perylene derivatives differ in important optoelectronic properties such as absorption and emission spectra or exciton diffusion lengths. Although those differences are well known, it is not fully understood if they are caused by variations in the geometrical orientation of the molecules within the aggregates, variations in the electronic structures of the dye aggregates or interplay of both. As this knowledge is of interest for the development of materials with optimized functionalities, we investigate this question by comparing the electronic structures of dimer systems of representative perylene‐based chromophores. The study comprises dimers of perylene, 3,4,9,10‐perylene tetracarboxylic acid bisimide (PBI), 3,4,9,10‐perylene tetracarboxylic acid dianhydride (PTCDA), and diindeno perylene (DIP). Potential energy curves (PECs) and characters of those electronic states are investigated which determine the optoelectronic properties. The computations use the spin‐component‐scaled approximate coupled‐cluster second‐order method (SCS‐CC2), which describes electronic states of predominately neutral excited (NE) and charge transfer (CT) character equally well. Our results show that the characters of the excited states change significantly with the intermolecular orientation and often represent significant mixtures of NE and CT characters. However, PECs and electronic structures of the investigated perylene derivatives are almost independent of the substitution patterns of the perylene core indicating that the observed differences in the optoelectronic properties mainly result from the geometrical structure of the dye aggregate. It also hints at the fact that optical properties can be computed from less‐substituted model compounds if a proper aggregate geometry is chosen. © 2012 Wiley Periodicals, Inc.     

Penicillium commune metabolic profile as a promising source of antipathogenic natural products

Penicillium is an important genus of ascomycetous fungi in the environment and in food and drug production. This paper aims to investigate statins and antipathogenic natural products from a Penicillium commune environmental isolate. Fractions (F1, F2, F3 and F4) were obtained from an ethyl acetate extract. Direct insertion probe/electron ionisation/ion trap detection mass spectrometry (MS and MS/MS) identified lovastatin (1) in F1, while GC-MS showed that 3-isobutylhexahydropyrrolo[1,2-a]pyrazine-1,4-dione (2) was the main constituent of F2 (49.34%). F4 presented 3 (16.38%) as an analogue of 2 and their known structures were similar to that of an autoinducer-signal. F1 produced a significant decrease in the Pseudomonas aeruginosa biofilms, which is the main cause of bacterial pathogenicity. F2 and F4 were effective against Staphylococcus aureus biofilms, but when F2 was associated with oxacillin, it showed an important activity against both bacteria. These novel results suggest that P. commune INTA1 is a new source of promising antipathogenic products.     

A new set of DIP‐SNP markers for detection of unbalanced and degraded DNA mixtures

Unbalanced and degraded mixtures (UDM) are frequently encountered during forensic DNA analysis. For example, forensic DNA units regularly encounter DNA mixture signal where the DNA signal from the alleged offender is masked or swamped by high quantities of DNA from the victim. Our previous data presented a new kind of DNA markers that composed of a deletion/insertion polymorphism (DIP) and a SNP and we termed this new kind of microhaplotypes DIP‐SNP (combination of DIP and SNP). Since such markers could be designed short enough for degraded DNA amplification, we hypothesized that DIP‐SNP markers are applicable for typing of UDM. In this study, we developed a new set of DIP‐SNPs with short amplicons which were complement to our prior developed system. The multiplex PCR and SNaPshot assay were established for 20 DIP‐SNPs in a Chinese Han population. The DIP‐SNPs were capable of detecting the minor contributor's allele in home‐made DNA mixture with sensitivities from 1:100 to 1:1000 with a total of 1 –10 ng input DNA. Moreover, this system successfully typed the degraded DNA whether it came from the single source or mixture samples. In Chinese population, the system showed an average informative value of 0.293 and combined informative value of 0.998363862. Our results demonstrated that DIP‐SNPs may serve as a valuable tool in detection of UDM in forensic medicine.