Solc型双折射滤波器离轴消光比的研究

提出了一种Solc型双折射滤波器的离轴消光比的一般性计算方法，利用所得结果模拟出了Solc型双折射滤波器的锥光干涉图以及发散光积分消光比与波长和发散角的关系曲线，实验结果证实了理论推算的合理性，此外本方法也适用于计算各种类型双折射滤波器的离轴消光比。     

Clustering of chemical databases by means of the projection of maximum overlapping sets similarity measurements onto multidimensional spaces

In this paper, we propose a new method for clustering of chemical databases based on the representation of measurements of structural similarity onto multidimensional spaces. The proposed method permits the tuning of the clustering process through the selection of the dimension of the projection space, the normal vectors and the sensibility of the projection process. The structural similarity of each element regarding to the database elements is projected onto the defined spaces generating clusters that represent the characteristics and diversity of the database and whose size and characteristics can be easily adjusted.     

Calculating the knowledge-based similarity of functional groups using crystallographic data

A knowledge-based method for calculating the similarity of functional groups is described and validated. The method is based on experimental information derived from small molecule crystal structures. These data are used in the form of scatterplots that show the likelihood of a non-bonded interaction being formed between functional group A (the `central group') and functional group B (the `contact group' or `probe'). The scatterplots are converted into three-dimensional maps that show the propensity of the probe at different positions around the central group. Here we describe how to calculate the similarity of a pair of central groups based on these maps. The similarity method is validated using bioisosteric functional group pairs identified in the Bioster database and Relibase. The Bioster database is a critical compilation of thousands of bioisosteric molecule pairs, including drugs, enzyme inhibitors and agrochemicals. Relibase is an object-oriented database containing structural data about protein-ligand interactions. The distributions of the similarities of the bioisosteric functional group pairs are compared with similarities for all the possible pairs in IsoStar, and are found to be significantly different. Enrichment factors are also calculated showing the similarity method is statistically significantly better than random in predicting bioisosteric functional group pairs.     

Bibliometric Analysis of the <Emphasis Type="Italic">Journal of Structural Chemistry</Emphasis>

Bibliometric analysis has been carried out for the Journal of Structural Chemistry (JSC) published since 1960 by the Siberian Branch of the Russian Academy of Sciences. All JSC publications which appeared between 1960 and 2002 have been chosen online from the Chemical Abstracts and Science Citation Index databases of the STN International net and analyzed according to topics, authors, affiliations, and other criteria. JSC authors and publications with the largest numbers of citations have been identified. The impact factor has been determined for JSC 2002.Original Russian Text Copyright © 2004 by V. M. Buznik, I. V. Zibareva, V. N. Piottukh-Peletskii, and N. I. Sorokin__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 6, pp. 1142–1153, November–December, 2004.     

Integrated Access to Genomic and Other Bioinformation: An Essential Ingredient of the Drug Discovery Process

Abstract

Due to the high rate of data production and the need of researchers to have rapid access to new data, public databases have become the major medium through which genome mapping and sequencing data as well as macromolecular structural data are published. There are now more than 250 databases of biomolecular, structural, genetic, or phenotypic data, many of which are doubling in size annually. These databases, many of which were created and are maintained by experimentalists for their own research use, provide valuable collections of organized, validated data. However, the very number and diversity of databases now make efficient data resource discovery as important as effective data resource use. Existing autonomous biological databases contain related data which are more valuable when interconnected than when isolated. Political and scientific realities dictate that these databases will be built by different teams, in different locations, for different purposes, and using different data models and supporting DBMSs. As a consequence, connecting the related data they contain is not straightforward. Experience with existing biological databases indicates that it is possible to form useful queries across these databases, but that doing so usually requires expertise in the semantic structure of each source database. Advancing to the next level of integration among biological information resources poses significant technical and sociological challenges.     

Statistics of the Popularity of Chemical Compounds in Relation to the Non-Target Analysis

The idea of popularity/abundance of chemical compounds is widely used in non-target chemical analysis involving environmental studies. To have a clear quantitative basis for this idea, frequency distributions of chemical compounds over indicators of their popularity/abundance are obtained and discussed. Popularity indicators are the number of information sources, the number of chemical vendors, counts of data records, and other variables assessed from two large databases, namely ChemSpider and PubChem. Distributions are approximated by power functions, special cases of Zipf distributions, which are characteristic of the results of human/social activity. Relatively small group of the most popular compounds has been denoted, conventionally accounting for a few percent (several million) of compounds. These compounds are most often explored in scientific research and are practically used. Accordingly, popular compounds have been taken into account as first analyte candidates for identification in non-target analysis.     

Fitting elephants in the density functionals zoo: Statistical criteria for the evaluation of density functional theory methods as a suitable replacement for counting parameters

Counting parameters has become customary in the density functional theory community as a way to infer the transferability of popular approximations to the exchange‐correlation functionals. Recent work in data science, however, has demonstrated that the number of parameters of a fitted model is not related to the complexity of the model itself, nor to its eventual overfitting. Using similar arguments, here, we show that it is possible to represent every modern exchange‐correlation functional approximations using just one single parameter. This procedure proves the futility of the number of parameters as a measure of transferability. To counteract this shortcoming, we introduce and analyze the performance of three statistical criteria for the evaluation of the transferability of exchange‐correlation functionals. The three criteria are called Akaike information criterion, Vapnik‐Chervonenkis criterion, and cross‐validation criterion and are used in a preliminary assessment to rank 60 exchange‐correlation functional approximations using the ASCDB database of chemical data.     

化学概念教学中学生归纳与演绎思维的培养*——基于对“电解质”概念教学的分析

归纳与演绎思维在化学概念的形成、巩固和应用过程中发挥着重要作用,化学概念教学中归纳与演绎思维的培养要遵循生为主体师为主导、概念教学与思维培养相统一、思维培养和概念教学循序渐进、归纳演绎与分析综合相结合的原则。以“电解质”概念的教学为例,分别从化学概念教学中归纳思维的培养和演绎思维的培养等2个维度对具体培养路径进行了阐释。     

Evolution of spectroscopic information over the last decade and its effect on line-by-line calculations for validation of radiation codes for climate models

Five HITRAN's editions (since 1992) and three radically new H₂O spectral databases have been tested for their usefulness in line-by-line benchmark calculations for radiation code validations. The longwave calculations for the mid-latitude summer (MLS) atmosphere with the different HITRAN's editions revealed a good convergence (maximal discrepancies since decreased to in our flux calculations with 1992-2002 and 1996-2002 HITRAN's editions, respectively). The shortwave calculations with different HITRAN's editions revealed a good agreement: discrepancies in downward fluxes absorbed by the MLS atmosphere are less than , i.e. 0.5% for the all HITRAN's editions since 1992. It has been determined that it is unreasonable to replace HITRAN by any new H₂O spectral database in benchmark calculations, although they contain essentially more spectral lines than HITRAN (up to ∼10 times). Moreover, it has been found that no new database could be useful for explaining the “anomalous absorption” problem. Two latest water vapor continuum models have been tested as well. It has been found out that these models are the main source of uncertainties in the present and previous calculations: discrepancies for the MLS atmosphere reached ∼3 and in the longwave and shortwave flux calculations, respectively.     

The Lattice of Deductive Systems on Hilbert Algebras

The concept of deductive system on a Hilbert algebra was introduced by A. Diego. We show that the set Ded A of all deductive systems on a Hilbert algebra A forms an algebraic lattice which is distributive.AMS Classification (2000): 06F35, 03G25, 08A30