反相液相色谱中固定相和流动相对柱相比的贡献

依据柱相比的热力学定义和反相液相色谱中溶质的计量置换保留理论(the stoichiometric dispheement heory of solute for retention，SDT-R)，对反相液相色谱中固定相和流动相性质、温度对柱相比的影响进行了研究。结果表明：固定相的种类和配基的疏水性对柱相比影响较大，而流动相中有机溶剂的种类，特别是脂肪酸作为置换剂时，对柱相比的影响更大，而柱相比受温度的影响较小。此外，通过用27种小分子溶质对柱相比的测定，其logI和Z良好的线性关系，进一步证明柱相比是一个与溶质性质无关的常数。     

Solute diffusion in swollen membranes VII. Diffusion in semicrystalline networks

A model is developed to express the solute diffusion coefficient through semicrystalline polymeric networks. The crystallites create impermeable diffusional barriers around the amorphous regions. Solute diffusion is determined by applying a transport model to the amorphous phase and incorporating the crosslinked polymer structure characteristics. This model is tested with theophylline and vitamin B₁₂ permeation experiments through semicrystalline poly(vinyl alcohol) membranes prepared by annealing of amorphous PVA membranes. The degree of crystallinity varies between 23.1 % and 40.5 % on a dry basis. The solute diffusion coefficients correlate well with various parameters of the model.     

Profiling and comprehensive expression analysis of ABC transporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach

We analyzed ABC transporter solute-binding proteins (SBPs) of the Bacillus subtilis membrane using a proteomic approach. We prepared a washed cell membrane fraction that was insoluble in 134 mM nondetergent sulfobetaine and then extracted proteins using mixtures of detergents in a stepwise manner. The membrane proteins were resolved by three two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) or two one-dimensional (1-D) PAGE procedures, electroblotted, and digested in the presence of 5% or 80% acetonitrile. Thereafter, matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF MS) identified 637 proteins corresponding to 15.9% of the total cellular proteins. We predicted that among these, 256 were membrane proteins, 101 were lipoproteins or secretory proteins and 280 were soluble proteins containing peripheral proteins that function in both the cytoplasm and the cell membrane such as SecA and FtsY. Among the 637 proteins, we identified 30 SBPs among 38 importers predicted by a bioinformatic search of the genome. We confirmed expression of the genes for the 30 SBPs using DNA microarray analysis. We compared the 2-D gel separation profiles of submembrane fractions solubilized by 1% n-dodecyl-beta-D-maltoside from cells cultured on Luria Bertani (LB), S7, and S7 medium without glutamate as well as DNA microarray data on LB and S7. The results suggested that YcdH, YtmK and YurO are binding proteins for Mn(++), glutamate and glucose, respectively, and that YqiX and YxeM are binding proteins for amino acids (tryptophan in S7 medium).     

Isotope Effect on Fractional Dilatability of Solute Water as an Indicator of the H-Bonding Ability of an Aprotic Dipolar Solvent

Based on experimental data about the density of very dilute solutions of H₂O and D₂O in 1,4-dioxane, hexamethylphosphotriamide, and acetonitrile at 278.15 K-318.15 K we determined the limiting partial molar volume (error ±0.03 cm³·mol⁻¹) and dilatability of the water component. A correlation equation has been derived which relates the isotope effect (IE) in the limiting excess partial molar dilatability of water to the energy of the H₂O-solvent hydrogen bond. The stated IE may be used as a “structural indicator” for evaluating the ability of an aprotic dipolar solvent to undergo specific interactions through hydrogen bonding.Original Russian Text Copyright © 2004 by E. V. Ivanov, V. K. Abrosimov, and E. Yu. Lebedeva__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 6, pp. 1020–1026, November–December, 2004.     

Application of diode array detectors for solute identification in toxicological analysis

Summary The possibilities and limitation of automated solute identification via UV/VIS spectroscopy in HPLC are demonstrated and applications in toxicologic analysis are described. A standard isocratic system is used. The influence of various chromatographic parameters on retention time is shown. A retention time window of ±15% is required. In addition to retention time, derived spectral data are calculated (minima and maxima of derivatives, area counts under standardized spectral ranges, absorption at various wavelength) and used for positive solute identification. It is possible to identify solutes with a high degree of certainty in urine and plasma if their concentration is at least 10 ppm.     

Two‐dimensional replica‐exchange method for predicting protein–ligand binding structures

We have developed a two‐dimensional replica‐exchange method for the prediction of protein–ligand binding structures. The first dimension is the umbrella sampling along the reaction coordinate, which is the distance between a protein binding pocket and a ligand. The second dimension is the solute tempering, in which the interaction between a ligand and a protein and water is weakened. The second dimension is introduced to make a ligand follow the umbrella potential more easily and enhance the binding events, which should improve the sampling efficiency. As test cases, we applied our method to two protein‐ligand complex systems (MDM2 and HSP 90‐alpha). Starting from the configuration in which the protein and the ligand are far away from each other in each system, our method predicted the ligand binding structures in excellent agreement with the experimental data from Protein Data Bank much faster with the improved sampling efficiency than the replica‐exchange umbrella sampling method that we have previously developed. © 2013 Wiley Periodicals, Inc.     

Optimal flow conditions of a tracheobronchial model to reengineer lung structures

The high demand for lung transplants cannot be matched by an adequate number of lungs from donors. Since fully ex-novo lungs are far from being feasible, tissue engi-neering is actively considering implantation of engineered lungs where the devitalized structure of a donor is used as scaffold to be repopulated by stem cells of the receiv-ing patient. A decellularized donated lung is treated inside a bioreactor where transport through the tracheobronchial tree (TBT) will allow for both deposition of stem cells and nour-ishment for their subsequent growth, thus developing new lung tissue. The key concern is to set optimally the boundary conditions to utilize in the bioreactor. We propose a pre-dictive model of slow liquid ventilation, which combines a one-dimensional (1-D) mathematical model of the TBT and a solute deposition model strongly dependent on fluid velocity across the tree. With it, we were able to track and drive the concentration of a generic solute across the airways, look-ing for its optimal distribution. This was given by properly adjusting the pumps' regime serving the bioreactor. A feed-back system, created by coupling the two models, allowed us to derive the optimal pattern. The TBT model can be easily invertible, thus yielding a straightforward flow/pressure law at the inlet to optimize the efficiency of the bioreactor.     

Prediction of binary interaction coefficients in grain boundary segregation

A simple semiempirical method is proposed for prediction of the values of the binary interaction coefficients in grain boundary segregation (Fowler interaction). The method is based on the volume solid solubility, the maximum possible concentration of the solute at the grain boundary, and an additional parameter that represents an activity exponent of both the solute and the host metal. Values of the interaction coefficients for numerous solutes in α‐iron are predicted. The comparison with available literature data shows reasonable agreement.     

Comparison of solubility of gases and vapours in wet and dry alcohols,especially octan‐1‐ol

Equations for the solubility of gases and vapours into dry alcohols from methanol to decan‐1‐ol and into water‐saturated alcohols from butan‐1‐ol to decan‐1‐ol have been compared through the use of the Abraham solvation equation. It is shown that there are noticeable differences in solvation into the dry and wet alcohols, and that these differences become larger as the alcohols become smaller and take up more water. The two main factors that lead to the differences in solvation are the solute hydrogen‐bond basicity, B, and solute size, L. Increase in solute hydrogen‐bond basicity favours the wet alcohols and increase in solute size favours the dry alcohols. Solute hydrogen‐bond acidity plays no part, because the hydrogen‐bond basicity of water, wet alcohols and dry alcohols is almost the same. Copyright © 2008 John Wiley & Sons, Ltd.