Conformational analysis of hydroxymatairesinol in aqueous solution with molecular dynamics

Molecular dynamics simulations were performed on the naturally occuring lignan hydroxymatairesinol (HMR) using the GROMACS software. The aim of this study was to explore the conformational behavior of HMR in aqueous solution adopting the TIP4P model. The topology of HMR was constructed by hand and HMR was modeled with the OPLS‐AA force field implemented in GROMACS. The five torsional angles in HMR were properly analyzed during the simulations. Correlations through certain patterns were observed between the angles. The determining property for the conformation preferred in aqueous solution was found to be the dipole moment and not the lowest energy in gas phase. The solvation effects on HMR was also studied by quantum chemical calculations applying the COnductorlike Screening MOdel (COSMO), the results of which were compared with results from a previous study using the Polarized Continuum Model (PCM). In the present work, COSMO was found to give more credible relative energies than PCM. © 2009 Wiley Periodicals, Inc., J Comput Chem, 2009     

A Study of the Constituents of the Heartwood of Tsuga Chinensis Pritz. Var. Formosana (Hay.)

By means of spectroscopic analysis, X-ray crystallography and chemical correlation the heartwood of Taiwan hemlock was found to contain compounds of sterols, carboxylic acids, 13-epimanool, o methoxyphenolics, coniferaldehyde, benzofuranoid neolignan, α-conidendrin, tsugacetal, isolariciresinol, secoisolariciresinol, matairesinol, hydroxymatairesinol and oxomatairesinol. Among them (+)-tsugacetal is a novel lignan acetal having an α-conidendrin related structure with the acetal methoxy group at the β-position.     

Oxidative transformation of the natural lignan hydroxymatairesinol with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone

The oxidative transformation of the two isomers of the natural lignan hydroxymatairesinol from Norway Spruce (Picea abies) by 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ), has been studied. Significant differences in the outcome of the reactions were observed when the pure isomers of hydroxymatairesinol were reacted with DDQ under the same conditions. The different stereoelectronic effects in the two isomers as well as their conformational structures seem to determine the site of reaction, which results in different reaction products. Several products were identified by GC-MS and NMR spectroscopy. Oxomatairesinol was obtained in a yield of 25%.     

Systematic conformational search analysis of the SRR and RRR epimers of 7‐hydroxymatairesinol

An extensive and systematic conformational search was performed on the two epimers of the natural lignan 7‐hydroxymatairesinol (HMR), by means of a home‐made Systematic Conformational Search Analysis (SCSA) code, designed to select more and more stable conformers through sequential geometry optimization of trial structures at increasing levels of calculation theory. In the present case, the starting molecular structures were selected by the semi‐empirical AM1 method and filtered – i.e. decreased in number by choosing the more stable species – on the basis of their energy calculated by the HF method and the 6‐31G(d) basis set. The geometries obtained were further refined by performing density functional theory (DFT) optimizations, using the B3LYP functional and the 6‐31G(d,p) basis set, both in vacuo and in ethanol solution. This procedure allowed us to isolate, at a high level of theory, three groups of epimer conformers characterized by open, semi‐folded, and folded conformations. Moreover, the SCSA allowed us to describe a conformational space made‐up by about 20 species for each of the two epimers. The corresponding energy content of these species was within 27 kJ mol^?1 from the absolute minimum found, both in vacuo and in ethanol solution. The conformational analysis, followed by the inspection of the stereochemistry of the two most stable conformers of both epimers, provides support in rationalizing the proposed reaction mechanism of the catalytic hydrogenolysis of the HMR to matairesinol (MAT). Copyright © 2009 John Wiley & Sons, Ltd.