麦胚凝集素亲和色谱富集糖肽过程中的肽键裂解

蛋白质的糖基化是最重要的翻译后修饰之一,与蛋白质结构和功能的关系密切。凝集素亲和色谱是蛋白质糖基化研究中很常用的工具,不同的凝集素可以对不同的单糖或寡糖有特异的富集作用。麦胚凝集素（WGA）由于其特异作用的糖型广泛存在而成为使用最多的凝集素之一。在本研究中,发现将WGA用于糖肽亲和富集会导致部分肽段的降解,从而导致后续的肽段序列分析的失败。本文用4种标准蛋白质对这种现象进行了验证,结果表明肽段的降解可以发生在多个位点,其中较多地发生在酪氨酸、苯丙氨酸及亮氨酸的羧基端。这一结果提示：在糖蛋白质组研究中,如果应用WGA富集糖肽并采用质谱进行鉴定,则采用半酶切或非特异性酶切的检索策略更为合适。     

Lectin-bound conformations and non-covalent interactions of glycomimetic analogs of thiochitobiose

The bound conformations of five S-glycoside analogs of N,N′-diacetylchitobiose as well as their non-covalent interactions with two lectins, Phytolacca americana lectin (PAL) and wheat germ agglutinin (WGA), are reported. The conformations of the ligands were examined by trNOESY experiments and compared with the free, solution-state conformations and molecular modeling data obtained by force field calculations. In the case of S-aryl, S-glycosides with exclusively S-glycosidic linkages, similar free and lectin-bound conformations and non-covalent interactions were found, whereas they differed for mixed glycosides and for a thiazoline derivative. In addition, STD (saturation transfer difference) NMR magnetization transfer efficiencies at three different temperatures were determined and assessed with respect to the structural differences of these pseudosaccharides. The binding epitopes of each substrate with PAL and WGA were also determined.     

Correlative microscopy: a powerful tool for exploring neurological cells and tissues

Imaging tools for exploring the neurological samples have seen a rapid transformation over the last decade. Approaches that allow clear and specific delineation of targeted tissues, individual neurons, and their cell–cell connections as well as subcellular constituents have been especially valuable. Considering the significant complexity and extent to which the nervous system interacts with every organ system in the body, one non-trivial challenge has been how to identify and target specific structures and pathologies by microscopy. To this end, correlative methods enable one to view the same exact structure of interest utilizing the capabilities of typically separate, but powerful, microscopy platforms. As such, correlative microscopy is well-positioned to address the three critical problems of identification, scale, and resolution inherent to neurological systems. Furthermore, the application of multiple imaging platforms to the study of singular biological events enables more detailed investigations of structure–function relationships to be conducted, greatly facilitating our understanding of relevant phenomenon. This comprehensive review provides an overview of methods for correlative microscopy, including histochemistry, transgenic markers, immunocytochemistry, photo-oxidation as well as various probes and tracers. An emphasis is placed on correlative light and electron microscopic strategies used to facilitate relocation of neurological structures. Correlative microscopy is an invaluable tool for neurological research, and we fully anticipate developments in automation of the process, and the increasing availability of genomic and transgenic tools will facilitate the adoption of correlative microscopy as the method of choice for many imaging experiments.     

Effect of quality characteristics of single sample preparation steps in the precision and coverage of proteomic studies—A review

Proteomic profiling and biomarker search are analytical tools as many other. Nevertheless, in the proteomic discovery phase considerable sample fractionation is inevitable before readout. Since these procedures are of notable complexity, proteomic tools need in particular analytical quality validation standards as prevail for other analytical methods. With acceptance of the rule of error propagation the values of imprecision and yield of each preparation step determine overall reproducibility and therewith information harvest of a propagated method series. Thereto, we examined recent proteomic reports with reproducibility data and with parallelization, and automation approaches. Based on the data available from literature it is highly probable, that at least a part of current proteomic platforms actually suffer from high technical variance.     

Lectin recognition of liposomes containing neoglycolipids. Influence of their lipidic anchor and spacer length

Eleven neoglycolipids were synthesized with a membrane anchor (cholesterol or Guerbet alcohols) attached, via a hydrophilic spacer, to a potential lectin-recognized sugar moiety (N-acetylglucosamine: GlcNAc). Neoglycolipids G24-0, G28-0 and G32-0, with a C₂₄, C₂₈ and C₃₂ Guerbet alcohol residue, had no spacer, while neoglycolipids G24-3, G28-3, G32-3 contained a triethoxy spacer. Cholesteryl neoglycolipids chol-1 to chol-4 and chol-7 contained one to four and seven ethoxy units. All the cholesteryl neoglycolipids were incorporated into liposomes, while, for the Guerbet derivatives, the presence (or not) of a spacer and the length of their alkyl chains played an important role for obtaining mixed liposomes. The abilities of liposomes to be recognized by wheat germ agglutinin (WGA) were measured as an increase of the absorbance at 450 nm. Significant WGA-induced aggregations were obtained with liposomes containing neoglycolipids chol-3, chol-4, chol-7, G28-3 and G32-3. As neoglycolipid G24-3 was not recognized, the accessibility of its GlcNAc moiety for WGA depended not only on the spacer length but on the nature of the anchor. The WGA-induced aggregations increased with increasing lectin concentrations until a maximum value, which depended on the nature of the neoglycolipid. The highest aggregation obtained with G28-3 and G32-3 occurred for a WGA–neoglycolipid mole ratio superior to the ratio observed with chol-3, chol-4 and chol-7. A preincubation of WGA with free GlcNAc did not inhibit the aggregation between WGA and mixed liposomes, demonstrating a greater affinity of WGA for the neoglycolipid GlcNAc than for free GlcNAc.