Hinge peptide combinatorial libraries for inhilbitors of botulinum neurotoxins and saxitoxin: Deconvolution strategy

Combinatorial library screening offers a rapid process for identifying potential therapies to toxins. Hinge peptide libraries, which rely on conformational diversity rather than traditional molecular diversity, reduce the need for huge numbers of syntheses and screening steps and greatly expedite the discovery process of active molecules. Hinge peptide libraries having the structures: Acetyl-X₁–X₂–hinge–X₃–X₄–NH₂ (capped) and X₁–hinge–X₂–X₃ (uncapped), where X₁ through X₄ are near-equimolar mixtures of twelve L-amino acids and hinge = 4-aminobutyric acid, were screened for inhibitory activity in bioassays for botulinum neurotoxins A and B (BoNT/A, BoNT/B) and saxitoxin. The zinc protease activity of the reduced light chains of BoNT/A and /B was assayed by measuring the cleavage of synthetic substrates. Saxitoxin activity was measured by the restoration of the viability of neuroblastoma cells treated with ouabain and veratridine. Deconvolution of libraries was accomplished by fixing one position at a time beginning with the C-terminus. Primary library subsets in which position 4 was fixed showed moderate levels of inhibition for BoNT/A. Secondary library subsets showed stronger inhibition in the bioassays. In each of the bioassays, inhibitory potency was stronger when the second position to be fixed was on the opposite side of the hinge, rather than on the same side with respect to the C-terminus, suggesting that the hinge facilitates the interaction of side chains. Inhibitors for all three of the toxins studied were discovered within library subsets, although not necessarily in primary subsets. These studies demonstrate that (1) the best strategy for deconvoluting hinge peptide libraries is by fixing residues alternately on each side of the hinge moiety, and (2) it is essential to investigate secondary subsets even when primary subsets are inactive. The present findings support the concept that the increased flexibility imposed by the inclusion of a central hinge residue in small peptides increases the opportunity for side chain interactions, providing a distinct advantage for hinge peptide libraries over conventional peptide libraries. Hinge peptide libraries are a rich source of novel ligands for modulation of biomechanisms. The library subsets uncovered in this study may possess peptides that will lead to effective therapies to neurotoxin poisoning.     

A piecewise local regularized Richardson-Lucy algorithm for remote sensing image deconvolution

As it is not possible to obtain an accurate point spread function (PSF) in remote sensing imaging, classic deconvolution methods such as Wiener filtering often introduce strong noise and ringing artifacts, which contaminate the restored images. In this paper, we modify the standard Richarson-Lucy (RL) algorithm with a piecewise local regularization term and combine it with residual deconvolution method. Experimental results show that it is effective in suppressing negative effects, and images with rich details and sharp edges are obtained.     

微分消卷积法提高重迭谱图的分辨率

本文介绍了微分消卷积法的基本原理,通过对模拟谱图与各种类型的实测谱图进行微分消卷积处理,说明该方法能使谱峰宽度减小,从而提高重叠谱图的分辨率,提高了重叠谱图的解析精度。     

Energy transfer kinetics of phycoerythrocyanins (PECs) from the cyanobacterium Anabaena variabilis(Ⅰ)

The excitation energy transfer processes in nionomeric phycoerythrocyanins ( PEC)have been studied in detail using steady-state and time-resolved fluorescence spectra techniques as well as the deconvolution fech nique of spectra.The results indicate that the energy transfer processes should take place between α84 PVB md β8 or β155-PCB chromophores,the time constants of energy transfer are 34.7 and 130 ps individually;the component with lifetime of 1.57 ns originates from the fluorescence lifetime of the terminal emitter of β84 and /or β155 PCB chre-mophores; and the component with lifetime of 515 ps might be assigned to the energy transfer between two PCB chro mophores of β subunit.     

A study of the practical limitations of principal components analysis and the labelling of unresolved HPLC peaks

Summary The method of iterative target transformation factor analysis (ITTFA) used in conjunction with second derivative peak finding has shown to be a practical method for the peak deconvolution and reconstruction of HPLC chromatograms and spectra. The second derivative method of peak finding is acceptable for resolutions above 0.5 for peaks of similar heights. Above 0.5 resolution the labelling gives correct results where the spectra are substantially different and also when reasonably similar. Below this value the peak labelling was still accurate where the spectra were different. Solvent effects on the spectra of the compounds studied are small and do not hinder the peak labelling process. Thus small “local” libraries are feasible. Presented at the 17th International Symposium on Chromatography, September 25–30, 1988. Vienna, Austria.     

Combined on-line transmission FTIR measurements and BTEM analysis for the kinetic study of a consecutive reaction in aqueous-organic phase medium

Combined on-line transmission FTIR spectroscopy and band-target entropy minimization (BTEM) analysis were employed in order to monitor and analyze the kinetics of the alkaline hydrolysis reaction of diethyl phthalate (DEP) in aqueous-ethanol solvent mixture. This reaction is irreversible and involves two consecutive steps with the formation of the observable mono-ion intermediate species. The pure component mid-FTIR spectra of the reactive species involved in this reaction, namely DEP, mono-ion intermediate and di-ion product were successfully reconstructed using BTEM. Their corresponding concentrations were also calculated and subsequently employed to derive the kinetic rate parameters. The effect of temperature and the solvent mixture compositions on these two consecutive reaction steps were also discussed. The temperature variation study showed that both reaction rate coefficients increased with temperature. Both rate coefficients were also affected by the solvent mixture compositions and reached minimum values at certain water-ethanol solvent composition (circa 60% (v/v)). This study shows the utility of combined on-line transmission FTIR spectroscopy and chemometric techniques for the present, rather complex, consecutive organic reaction. Moreover, the present type of approach could facilitate better understanding of a wide variety of organic reactions that are performed in aqueous and mixed aqueous-organic solvents.     

Monitoring and classification of wastewater quality using supervised pattern recognition techniques and deterministic resolution of molecular absorption spectra based on multiwavelength UV spectra deconvolution

A field flow approach for the in situ monitoring of wastewater quality is developed and assessed in this work, based on a combination of methods employing deconvolution of molecular absorption spectra and in situ/on-line analysis of wastewater effluent of various origin. The approach involves in situ immersion probes to monitor basic physicochemical parameters followed by UV spectrum deconvolution in order to provide a rapid estimate of organic matter, suspended solids and nitrate and on-line analysis of phosphates in a fully automated setup. The collected data are then treated with a series of supervised pattern recognition techniques in order to classify wastewater effluent according to their origin in three major categories namely municipal, industrial and hospital. The results suggest that the method affords a good approximation of realistic concentrations, as determined by reference methods, while it affords a good classification among various wastewater effluents of different origin. In that manner, the method enables a rapid inference of treated wastewater quality and a robust assessment of treatment process state, especially with regards to violations of effluent quality parameters.