Steroidal Antimetabolites Protect Mice against Trypanosoma brucei

Trypanosoma brucei, the causative agent for human African trypanosomiasis, is an emerging ergosterol-dependent parasite that produces chokepoint enzymes, sterol methyltransferases (SMT), not synthesized in their animal hosts that can regulate cell viability. Here, we report the lethal effects of two recently described natural product antimetabolites that disrupt Acanthamoeba sterol methylation and growth, cholesta-5,7,22,24-tetraenol (CHT) and ergosta-5,7,22,24(28)-tetraenol (ERGT) that can equally target T. brucei. We found that CHT/ERGT inhibited cell growth in vitro, yielding EC₅₀ values in the low nanomolar range with washout experiments showing cidal activity against the bloodstream form, consistent with their predicted mode of suicide inhibition on SMT activity and ergosterol production. Antimetabolite treatment generated altered T. brucei cell morphology and death rapidly within hours. Notably, in vivo ERGT/CHT protected mice infected with T. brucei, doubling their survival time following daily treatment for 8–10 days at 50 mg/kg or 100 mg/kg. The current study demonstrates a new class of lead antibiotics, in the form of common fungal sterols, for antitrypanosomal drug development.     

Cyanide Biodegradation by Trichoderma harzianum and Cyanide Hydratase Network Analysis

Cyanide is a poisonous and dangerous chemical that binds to metals in metalloenzymes, especially cytochrome C oxidase and, thus, interferes with their functionalities. Different pathways and enzymes are involved during cyanide biodegradation, and cyanide hydratase is one of the enzymes that is involved in such a process. In this study, cyanide resistance and cyanide degradation were studied using 24 fungal strains in order to find the strain with the best capacity for cyanide bioremediation. To confirm the capacity of the tested strains, cyano-bioremediation and the presence of the gene that is responsible for the cyanide detoxification was assessed. From the tested organisms, Trichoderma harzianum (T. harzianum) had a significant capability to resist and degrade cyanide at a 15 mM concentration, where it achieved an efficiency of 75% in 7 days. The gene network analysis of enzymes that are involved in cyanide degradation revealed the involvement of cyanide hydratase, dipeptidase, carbon–nitrogen hydrolase-like protein, and ATP adenylyltransferase. This study revealed that T. harzianum was more efficient in degrading cyanide than the other tested fungal organisms, and molecular analysis confirmed the experimental observations.     

Catalytic transfer hydrogenation reactions of PEG-bound succinyl esters

Various substrates bound to polyethylene glycol (PEG) through succinyl ester linkages were cleaved under catalytic transfer hydrogenation conditions. The substrates with unsaturated functions also underwent hydrogenation. The protocol was found to be suitable for substrates having acid and base labile functional groups.     

A computational fluid dynamics study by conjugate heat transfer in OpenFOAM: A liquid cooling concept for high power electronics

A conjugate heat transfer (CHT) study of a liquid cooling heat exchanger is carried out using the open source computational fluid dynamics (CFD) library OpenFOAM. The heat exchanger was 3D printed using aluminium and experimentally verified by temperature probing and thermal imaging. The functionality of the heat exchanger in cooling localized heat sources is demonstrated. Three different turbulence models were utilized including k-$\omega$ shear stress transport (SST) model, the standard k-$\epsilon$ model and large-eddy simulation (LES). The numerical results indicate that the k-$\omega$ SST and LES models produced similar results in terms of flow structures and temperature levels while the k-$\epsilon$ model deviated from the two other models. The scalability of the heat exchanger was numerically demonstrated by comparing the flow uniformity by varying the inlet Reynolds number between 4960 and 14880. The conclusions of the paper consists of the following main results. (1) The numerical results indicate that the flow uniformity in the channels is noted to be affected by the flow structures before and after the fin system. (2) The simulated hot-spot temperatures were noted to be relatively sensitive to the predicted flow laminarization inside the channels. (3) The heat exchanger was shown to be functional and to maintain cool surface temperatures in the simulations and the experiments. Additionally, the used CHT solver in OpenFOAM is tested and verified in different ways.     

Cyanide Hydratase Modification Using Computational Design and Docking Analysis for Improved Binding Affinity in Cyanide Detoxification

Cyanide is a hazardous and detrimental chemical that causes the inactivation of the respiration system through the inactivation of cytochrome c oxidase. Because of the limitation in the number of cyanide-degrading enzymes, there is a great demand to design and introduce new enzymes with better functionality. This study developed an integrated method of protein-homology-modelling and ligand-docking protein-design approaches that reconstructs a better active site from cyanide hydratase (CHT) structure. Designing a mutant CHT (mCHT) can improve the CHT performance. A computational design procedure that focuses on mutation for constructing a new model of cyanide hydratase with better activity was used. In fact, this study predicted the three-dimensional (3D) structure of CHT for subsequent analysis. Inducing mutation on CHT of Trichoderma harzianum was performed and molecular docking was used to compare protein interaction with cyanide as a ligand in both CHT and mCHT. By combining multiple designed mutations, a significant improvement in docking for CHT was obtained. The results demonstrate computational capabilities for enhancing and accelerating enzyme activity. The result of sequence alignment and homology modeling show that catalytic triad (Cys-Glu-Lys) was conserved in CHT of Trichoderma harzianum. By inducing mutation in CHT structure, MolDock score enhanced from −18.1752 to −23.8575, thus the nucleophilic attack can occur rapidly by adding Cys in the catalytic cavity and the total charge of protein in pH 6.5 is increased from −6.0004 to −5.0004. Also, molecular dynamic simulation shows a stable protein-ligand complex model. These changes would help in the cyanide degradation process by mCHT.     

The distinctive separation attributes of mixed-mode resins and their application in monoclonal antibody downstream purification process

Increased upstream productivity and the continuous pressure to deliver high quality drug product have resulted in the development of new separation technologies and platform strategies for downstream purification processes of monoclonal antibodies (mAb). In this study, the separation attributes of three mixed-mode resins, Mercapto-Ethyl-Pyridine (MEP) hydrophobic charge induction resin, Capto adhere multi-modal anion exchange resin, and ceramic hydroxyapatite/fluoroapatite (CHT/CFT) resins, were investigated to define their roles in monoclonal antibody purification processes. We demonstrated that the multi-modal nature of ligands on mixed-mode resins allows the separation resolution to be honed, either through a single dominant mechanism or through mix-modal balanced purification strategies. In addition, the three mixed-mode resins present different purification powers for different types of impurities. We also demonstrated that besides enhancing chromatography separation and improve product quality, especially for high molecular weight (HMW) aggregate reduction, mixed-mode resins can also help to improve process efficiency in industrial-scale mAb drug manufacturing. Our results underscore the importance of selecting appropriate chromatography resins during DSP design to obtain the best overall process outcome.     

Preparation, Characterization of Hydrotalcites and the Catalytic Properties in Synthesis of o-Phenylphenol over Pt／CHT

Mg/Al mixed oxides with molar ratios of 2-6 of Mg to Al used as supports for platinum catalysts were obtained by the thermal decomposition method. The effect of the composition of the mixed oxides on the physicochemical properties was studied by TPD, nitrogen sorption, XRD and TG-DTA characterization methods. The synthesis of o-phenylphenol (OPP) from a dimer (obtained from cyclohexanone condensation) was investigated over Pt/CHT catalysts and compared with those over Pt/MgO and Pt/Al2O3 catalysts. These catalysts show a high activity and selectivity for OPP, with a conversion reaching 93.8% and a selectivity reaching 87.9% in some experiments. For Pt/CHTx catalysts, the calcined hydrotalcites exhibited strong base sites, which were necessary to catalyze the synthesis of OPP.