A Compound I Mimic Reveals the Transient Active Species of a Cytochrome P450 Enzyme: Insight into the Stereoselectivity of P450-Catalysed Oxidations

Catching the structure of cytochrome P450 enzymes in flagrante is crucial for the development of P450 biocatalysts, as most structures collected are found trapped in a precatalytic conformation. At the heart of P450 catalysis lies Cpd I, a short-lived, highly reactive intermediate, whose recalcitrant nature has thwarted most attempts at capturing catalytically relevant poses of P450s. We report the crystal structure of P450BM3 mimicking the state in the precise moment preceding epoxidation, which is in perfect agreement with the experimentally observed stereoselectivity. This structure was attained by incorporation of the stable Cpd I mimic oxomolybdenum mesoporphyrin IX into P450BM3 in the presence of styrene. The orientation of styrene to the Mo-oxo species in the crystal structures sheds light onto the dynamics involved in the rotation of styrene to present its vinyl group to Cpd I. This method serves as a powerful tool for predicting and modelling the stereoselectivity of P450 reactions.     

Synthesis of fluorinated materials catalyzed by proline or antibody 38C2 in ionic liquid

The utility of reusable ionic liquid-proline (or aldolase antibody 38C2) reaction system, proceeding the aldol reactions, is described. Further, obtained α-chloro-β-hydroxy compounds were transformed to the optically active α,β-epoxy carbonyl compounds. The aldolase antibody 38C2-ionic liquid system was able to reuse in Michael additions and the reaction of fluoromethylated imines.     

Ultrasonic-Combined Plasma Bubbling for Adherent Bacteria Disinfection on Medical Equipment

Plasma Chemistry and Plasma Processing - Atmospheric low-temperature plasma has received attention for application in disinfection methods. In this study, we develop a plasma bubbling method as a...     

Surface energy properties of lignin particles studied by inverse gas chromatography and interfacial adhesion in polyester composites with electromagnetic transparency

We introduce a simple spray drying method for the scaleup production of spherical organic (lignin) particles with sizes between 0.85 and 1.57 µm. We assess the surface energy of the lignin particles by inverse gas chromatography to reveal their role in composites synthesized with unsaturated polyester. Such nanocomposites are shown to be transparent to electromagnetic irradiation (millimeter wave bands). The permittivity and tanδ of the composite material reached values 3.01 and 0.01 at 28 GHz with 10% lignin content. Vinyl groups were introduced on the surface of the particles to achieve enhanced interfacial adhesion, and resulted in a reduced relative permittivity (2.75). Together with wave interactions, the mechanical and thermal properties of the composites are put in perspective, opening new opportunities in the development of bio-based devices for 5G high-speed communication.

     

Cationic gel crystals and amorphous solids of lightly cross-linked poly(2-vinylpyridine) spheres in the deionized aqueous suspension

Colloidal crystallization and amorphous solidification of deionized suspensions of the polydispersed cationic gel spheres of lightly cross-linked poly(2-vinylpyridine), CAIBA-P2VP (107～113 nm in diameter, ±19～22 nm in dispersity), have been studied from the reflection spectroscopy, morphology, phase diagram, and elastic property. Crystallization takes place even for the polydispersed cationic gel spheres by the significant contribution of the extended electrical double layers formed around the spheres. Critical concentrations of melting coexisted with ion exchange resins were around 0.02 in volume fraction and high compared with those of other cationic and anionic gel crystals examined hitherto. The densities (ρ) of CAIBA-P2VP in suspension state, i.e., weight percent of the gel spheres divided by the corresponding volume percent, was around 0.3. The ρ values decreased sharply with decreasing size of P2VP gel spheres, which supports the small gel spheres containing much water inside and being softer than the large ones. The closest intersphere distances of the crystals and/or amorphous solids were much longer than the hydrodynamic diameters of the gel spheres especially at low sphere concentrations. Fluctuation parameters (b) evaluated from the rigidities of CAIBA-P2VP (0.15～0.28) were large compared with those of gel crystals of large-sized P2VP-based cationic gel spheres, anionic thermosensitive gel spheres of poly(N-isopropylacrylamide) (0.05～0.09) and further much larger than those of typical colloidal hard spheres (around 0.03). The dispersity in sphere size played an important role for distinguishing crystal and amorphous solid. Importance of the extended electrical double layers around the cationic gel spheres is supported in addition to the excluded volume effect of the sphere themselves on the crystallization and/or solidification.     

Recent advances in the integrated micro-flow synthesis containing photochemical reactions

Micro-flow photochemical reactions have great advantage over batch photochemical reactions due to its high light-penetration efficiency. Integrated micro-flow reaction enables efficient synthesis of structurally complex compounds from simple starting materials and it can avoid handling of explosive, toxic, unstable, or odorous intermediates. Combination of micro-flow photochemical reactions with integrated micro-flow synthesis enhances their benefits. Here we summarize recently reported integrated multi-step micro-flow synthesis containing various photochemical reactions.     

Difference equations arising from cluster algebras

Journal of Algebraic Combinatorics - We characterize Y/T-system-type difference equations arising from cluster algebras by triples of matrices, which we call T-data, that have a certain symplectic...     

Study of Strangeness Photoproduction on the Neutron in the Threshold Region

Photoproduction of the neutral kaon on the deuteron has been investigated at the Research Center for Electron Photon Science, Tohoku University. We constructed the Neutral Kaon Spectrometer-2 for the detection of charged particles from the decay of the neutral kaon and the hyperon. We obtained a momentum distribution of K ⁰ with the inclusive measurement. It was consistent with the previous measurement. The total cross section of γ + d → K ⁰ + Λ + p was estimated from the measured integral cross section of γ + d → Λ + X. The total cross section with respect to the photon energy was compared with the theoretical calculations. It favored the Saclay-Lyon A model calculation with the ratio of the neutral to charged coupling constants of the axial-vector meson, K ₁, as ~ ?1.5. The energy dependence and the magnitude of the total cross section were similar to the total cross section of γ + p → K ⁺ Λ.     

Total Synthesis of Taxol Enabled by Inter- and Intramolecular Radical Coupling Reactions

Taxol is a clinically used drug for the treatment of various types of cancers. Its 6/8/6/4-membered ring (ABCD-ring) system is substituted by eight oxygen functional groups and flanked by four acyl groups, including a β-amino acid side chain. Here we report a 34-step total synthesis of this unusually oxygenated and intricately fused structure. Inter- and intramolecular radical coupling reactions connected the A- and C-ring fragments and cyclized the B-ring, respectively. Functional groups of the A- and C-rings were then efficiently decorated by employing newly developed chemo-, regio-, and stereoselective reactions. Finally, construction of the D-ring and conjugation with the β-amino acid delivered taxol. The powerful coupling reactions and functional group manipulations implemented in the present synthesis provide new valuable information for designing multistep target-oriented syntheses of diverse bioactive natural products.     

Proton-promoted oxygen atom transfer vs proton-coupled electron transfer of a non-heme iron(IV)-oxo complex

Sulfoxidation of thioanisoles by a non-heme iron(IV)-oxo complex, [(N4Py)Fe(IV)(O)](2+) (N4Py = N,N-bis(2-pyridylmethyl)-N-bis(2-pyridyl)methylamine), was remarkably enhanced by perchloric acid (70% HClO(4)). The observed second-order rate constant (k(obs)) of sulfoxidation of thioaniosoles by [(N4Py)Fe(IV)(O)](2+) increases linearly with increasing concentration of HClO(4) (70%) in acetonitrile (MeCN)at 298 K. In contrast to sulfoxidation of thioanisoles by [(N4Py)Fe(IV)(O)](2+), the observed second-order rate constant (k(et)) of electron transfer from one-electron reductants such as [Fe(II)(Me(2)bpy)(3)](2+) (Me(2)bpy = 4,4-dimehtyl-2,2'-bipyridine) to [(N4Py)Fe(IV)(O)](2+) increases with increasing concentration of HClO(4), exhibiting second-order dependence on HClO(4) concentration. This indicates that the proton-coupled electron transfer (PCET) involves two protons associated with electron transfer from [Fe(II)(Me(2)bpy)(3)](2+) to [(N4Py)Fe(IV)(O)](2+) to yield [Fe(III)(Me(2)bpy)(3)](3+) and [(N4Py)Fe(III)(OH(2))](3+). The one-electron reduction potential (E(red)) of [(N4Py)Fe(IV)(O)](2+) in the presence of 10 mM HClO(4) (70%) in MeCN is determined to be 1.43 V vs SCE. A plot of E(red) vs log[HClO(4)] also indicates involvement of two protons in the PCET reduction of [(N4Py)Fe(IV)(O)](2+). The PCET driving force dependence of log k(et) is fitted in light of the Marcus theory of outer-sphere electron transfer to afford the reorganization of PCET (λ = 2.74 eV). The comparison of the k(obs) values of acid-promoted sulfoxidation of thioanisoles by [(N4Py)Fe(IV)(O)](2+) with the k(et) values of PCET from one-electron reductants to [(N4Py)Fe(IV)(O)](2+) at the same PCET driving force reveals that the acid-promoted sulfoxidation proceeds by one-step oxygen atom transfer from [(N4Py)Fe(IV)(O)](2+) to thioanisoles rather than outer-sphere PCET.