Design and Asymmetric Synthesis of beta-Strand Peptidomimetics

We describe the asymmetric synthesis of non-peptidic compounds that feature rigid backbone conformations and present various side-chain functions. The key step in the synthesis of these compounds is the C-acylation of an appropriate ketone with a suitably protected aspartic acid derivative. The resulting dipeptide modules may be connected to form tetrapeptide mimics. Specifically is described the mimicry of a four-residue segment of CD4, the cellular receptor of HIV-1. The design was based on molecular modeling and the X-ray crystal structures of CD4 and intended to present the most important side chains and backbone elements of the Phe43-Lys46 segment.     

Resolving Sphingolipid Isomers Using Cryogenic Infrared Spectroscopy

1‐Deoxysphingolipids are a recently described class of sphingolipids that have been shown to be associated with several disease states including diabetic and hereditary neuropathy. The identification and characterization of 1‐deoxysphingolipids and their metabolites is therefore highly important. However, exact structure determination requires a combination of sophisticated analytical techniques due to the presence of various isomers, such as ketone/alkenol isomers, carbon–carbon double‐bond (C=C) isomers and hydroxylation regioisomers. Here we demonstrate that cryogenic gas‐phase infrared (IR) spectroscopy of ionized 1‐deoxysphingolipids enables the identification and differentiation of isomers by their unique spectroscopic fingerprints. In particular, C=C bond positions and stereochemical configurations can be distinguished by specific interactions between the charged amine and the double bond. The results demonstrate the power of gas‐phase IR spectroscopy to overcome the challenge of isomer resolution in conventional mass spectrometry and pave the way for deeper analysis of the lipidome.     

Radiation synthesis of starch-acrylic acid–vinyl sulfonic acid/multiwalled carbon nanotubes composite for the removal of 134Cs and 152+154Eu from aqueous solutions

Starch-acrylic acid-co-vinyl sulfonic acid/multiwalled carbon nanotubes (starch-AA-VSA/f-MWCNTs) bionanocomposite was successfully synthesized using gamma radiation for initiate the grafting of AA/VSA on starch in the presence of f-MWCNTs by template polymerization technique. The structural characteristics were confirmed by FTIR, SEM, and TGA. The adsorption behaviors of bionanocomposite toward Eu(III) and Cs(I) were examined using the batch adsorption experiments. Langmuir and Freundlich’s models were used to fit the experimental data of the adsorption isotherms. Kinetic studies showed that the adsorption data followed the pseudo-second-order model. Thermodynamic studies indicated that the reaction was favorable at high temperature and endothermic process.

     

Heck reaction with an alkenylidenecyclopropane: the formation of arylallylidenecyclopropanes

The palladium-tetraphosphine catalyzed arylation of an alkylidenecyclopropane gives a simple and direct access to 1-aryl-2-methyl-1-(2,2,3,3-tetramethylcyclopropylidene)propenes. This reaction tolerates several functional groups on the aryl bromides. Even heteroaryl bromides have been used successfully. This reaction probably proceeds via a classical oxidative addition of the aryl bromide to palladium, insertion of the CCMe₂ bond in the Ar-Pd bond followed by β-elimination to give the dienes.     

Substituent effects in the 13C NMR chemical shifts of para-(para-substituted benzylidene amino)benzonitrile and para-(ortho-substituted benzylidene amino)benzonitrile

¹³C NMR chemical shifts were measured in CDCl₃ for two series of substituted benzylidene anilines. The substituted benzylidene anilines p-X-C₆H₄CH=NC₆H₄-p-CN p-X-C₆H₄CH=NC₆H₄-o-CN (X = NO₂, F, Cl, Br, H, Me, MeO, NMe₂). The substituent dependence of δC(C=N) was used as a tool to study electronic substituent effects on the azomethine unit. The benzylidene substituents X have a reverse effect on δC(C=N): electron-withdrawing substituents cause shielding, while electrondonating ones do the reverse, the resonance effects clearly predominating over the inductive effects. Additionally, the presence of a specific cross-interaction between X and C=N could be verified. The electronic effects of the neighboring aromatic ring substituents systematically modify the sensitivity of the C=N group to the electronic effects of the benzylidene substituents. These results can be rationalized in terms of the substituent-sensitive balance of the electron delocalization (mesomeric effects).     

Calibrating a J2 plasticity material model using a 2D inverse finite element procedure

Material models are the key ingredients to accurately capture the global mechanical response of structural systems. The use of finite element analysis has proven to be effective in simulating nonlinear engineering applications. However, the choice of the appropriate material model plays a big role in the value of the numerical predictions. Such models are not expected to exactly reproduce global experimental response in all cases. Alternatively, the measured global response at specific domain or surface points can be used to guide the nonlinear analysis to successively extract a representative material model. By selecting an initial set of stress–strain data points, the load–displacement response at the monitoring points is computed in a forward incremental analysis without iterations. This analysis retains the stresses at the integration points. The corresponding strains are not accurate since the computed displacements are not anticipated to match the measured displacements at the monitoring points. Therefore, a corrective incremental displacement analysis is performed at the same load steps to adjust for displacements and strains everywhere by matching the measured displacements at the monitoring points. The stress–strain vectors at the most highly stressed integration point are found to establish an improved material model. This model is used within a multi-pass incremental nonlinear finite element analysis until the discrepancy between the measured and the predicted structural response at the monitoring points vanishes. The J2 flow theory of plasticity is used as a constitutive framework to build the tangent elastic–plastic matrices. The applicability of the proposed approach is demonstrated by solving 2D inverse continuum problems. The comparisons presented support the effectiveness of the proposed approach in accurately calibrating the J2 plasticity material model for such problems.     

Effects of Frankincense Compounds on Infection,Inflammation, and Oral Health

Boswellia trees, found throughout the Middle East and parts of Africa and Asia, are the source of frankincense oil. Since antiquity, frankincense has been traded as a precious commodity, but it has also been used for the treatment of chronic disease, inflammation, oral health, and microbial infection. More recently, the bioactive components of Boswellia trees have been identified and characterized for their effects on cancer, microbial infection (especially infection by oral pathogens), and inflammation. Most studies have focused on cell lines, but more recent research has also investigated effects in animal models of disease. As natural products are considered to be safer than synthetic drugs, there is growing interest in further developing the use of substances such as frankincense oil for therapeutic treatment.     

The Antibacterial Activity of Egyptian Wasp Chitosan-Based Nanoparticles against Important Antibiotic-Resistant Pathogens

The current work discusses the production and characterization of new biodegradable nanoparticles for biomedical applications based on insect chitosan. Chitosan has numerous features due to the presence of primary amine groups in repeating units, such as antibacterial and anticancer activities. When polyanion tripolyphosphate is added to chitosan, it creates nanoparticles with higher antibacterial activity than the original chitosan. In this study, the ionic gelation technique was used to make wasp chitosan nanoparticles (WCSNPs) in which TEM and FTIR were used to investigate the physicochemical properties of the nanoparticles. In addition, the antibacterial activities of chitosan nanoparticles against extended-spectrum beta-lactamase (ESBL)- and carbapenemase-producing Klebsiella pneumoniae, Escherichia coli, and Pseudomonas aeruginosa were evaluated. The extracted wasp chitosan exhibited high solubility in acetic acid and met all standard criteria of all characterization testes for nanoparticles; the zeta potential indicated stable WCSNPs capable of binding to cellular membrane and increasing the cellular uptake. The produced WCSNPs showed growth inhibition activity against all tested strains, and the bacterial count was lower than the initial count. The inhibition percent of WCSNPs showed that the lowest concentration of WCSNPs was found to be effective against tested strains. WCSNPs’ antibacterial activity implies that they could be used as novel, highly effective antibacterial agents in a variety of biological applications requiring antibacterial characteristics.     

Advanced glycation end products (AGEs) and other adducts in aging-related diseases and alcohol-mediated tissue injury

Advanced glycation end products (AGEs) are potentially harmful and heterogeneous molecules derived from nonenzymatic glycation. The pathological implications of AGEs are ascribed to their ability to promote oxidative stress, inflammation, and apoptosis. Recent studies in basic and translational research have revealed the contributing roles of AGEs in the development and progression of various aging-related pathological conditions, such as diabetes, cardiovascular complications, gut microbiome-associated illnesses, liver or neurodegenerative diseases, and cancer. Excessive chronic and/or acute binge consumption of alcohol (ethanol), a widely consumed addictive substance, is known to cause more than 200 diseases, including alcohol use disorder (addiction), alcoholic liver disease, and brain damage. However, despite the considerable amount of research in this area, the underlying molecular mechanisms by which alcohol abuse causes cellular toxicity and organ damage remain to be further characterized. In this review, we first briefly describe the properties of AGEs: their formation, accumulation, and receptor interactions. We then focus on the causative functions of AGEs that impact various aging-related diseases. We also highlight the biological connection of AGE–alcohol–adduct formations to alcohol-mediated tissue injury. Finally, we describe the potential translational research opportunities for treatment of various AGE- and/or alcohol-related adduct-associated disorders according to the mechanistic insights presented.Subject terms: Medical research, Experimental models of disease