Identification of marker proteins for Bacillus anthracis using MALDI-TOF MS and ion trap MS/MS after direct extraction or electrophoretic separation

Direct extraction of bacterial vegetative cells or spores followed by matrix-assisted laser desorption ionization/time of flight mass spectrometry (MALDI TOF MS) has become popular for bacterial identification, since it is simple to perform and mass spectra are readily interpreted. However, only high-abundance proteins that are of low mass and ionize readily are observed. In the case of B. anthracis spores, small acid-soluble spore proteins (SASPs) have been the most widely studied. Additional information can be obtained using tandem mass spectrometry (MS-MS) to confirm the identity of proteins by sequencing. This is most readily accomplished using ion trap (IT) MS-MS. However, enzymatic digestion of these proteins is needed to generate peptides that are within the mass range of the ion trap. The use of sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), or other forms of electrophoresis, allows one to focus on specific proteins of interest (e.g. the high mass exosporium glycoproteins BcIA and BcIB) that provide additional species- and strain-specific discrimination.     

N‐Alkoxyheterocycles As Irreversible Photooxidants

Irreversible photooxidation based on N–O bond fragmentation is demonstrated for N‐methoxyheterocycles in both the singlet and triplet excited state manifolds. The energetic requirements for bond fragmentation are studied in detail. Bond fragmentation in the excited singlet manifold is possible for ππ* singlet states with energies significantly larger than the N–O bond dissociation energy of ca 55 kcal mol^?1. For the nπ* triplet states, N–O bond fragmentation does not occur in the excited state for orbital overlap and energetic reasons. Irreversible photooxidation occurs in the singlet states by bond fragmentation followed by electron transfer. Irreversible photooxidation occurs in the triplet states via bimolecular electron transfer to the donor followed by bond fragmentation. Using these two sensitization schemes, donors can be irreversibly oxidized with oxidation potentials ranging from ca 1.6–2.2 V vs SCE. The corresponding N‐ethylheterocycles are characterized as conventional reversible photooxidants in their triplet states. The utility of these sensitizers is demonstrated by irreversibly generating the guanosine radical cation in buffered aqueous solution.     

Synthesis and Spectral Study of Several Solid M3[Eu(2,6-Pyridinedicarboxylate)3] Salts (M=Li+, Na+, K+, Rb+, Cs+, NH4 +, and Pyridinium+)

Abstract

Salts of the [Eu(2,6-pyridinedicarboxylate)₃]^3- complex anion and various monovalent inorganic and organic counterions (Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺, NH₄ ⁺, and pyridinium⁺) have been synthesized and studied by emission spectroscopy. The Eu³⁺ ion emission spectra exhibited by these salts have been observed with high resolution (less than 1.0 cm^?1) and at low temperature (77 K). The emission spectra of these compounds indicate that changing the attached counterion does not affect the site symmetry observed by the europium ion beyond slight distortions indicated by small shifts in the energies of the Eu³⁺ electronic levels.     

Reflective Tutoring: Insights into Preservice Teacher Learning

An undergraduate seminar was designed to help preservice teachers focus on students' learning. Preservice teachers planned and conducted weekly tutoring sessions with fourth graders and discussed their experiences in weekly discussions. The author investigated what preservice teachers learned about teaching mathematics from their focus on students' learning of mathematics. The author examined the tasks that preservice teachers posed to children, the questions they asked of children, and the reflections they wrote about their experiences. The article describes what the preservice teachers learned from their experiences and provides insights into their knowledge and skills for developing children's mathematical power.     

<Emphasis Type="Italic">q</Emphasis>,<Emphasis Type="Italic">t</Emphasis>-Fuß–Catalan numbers for finite reflection groups

In type A, the q,t-Fuß–Catalan numbers can be defined as the bigraded Hilbert series of a module associated to the symmetric group. We generalize this construction to (finite) complex reflection groups and, based on computer experiments, we exhibit several conjectured algebraic and combinatorial properties of these polynomials with nonnegative integer coefficients. We prove the conjectures for the dihedral groups and for the cyclic groups. Finally, we present several ideas on how the q,t-Fuß–Catalan numbers could be related to some graded Hilbert series of modules arising in the context of rational Cherednik algebras and thereby generalize known connections.     

Europium Oxychloride Absorption Spectroscopy as an Optical Probe of Temperature

The temperature dependence of the features which arise from the ⁷F_0,1 → ⁵D₃ absorption transitions in EuOCl as seen by diffuse-reflectance spectroscopy has been investigated. The transitions shift linearly to higher energy with increasing temperature. The ratio of the intensities of the transitions arising from the ⁷F₀ state to those arising from the ⁷F₁ state also appears to be a linear function of temperature.     

Diaryl sulfide-based inhibitors of trypanothione reductase: inhibition potency, revised binding mode and antiprotozoal activities

Trypanothione reductase (TR) is an essential enzyme of trypanosomatids and therefore a promising target for the development of new drugs against African sleeping sickness and Chagas' disease. Diaryl sulfides with a central anilino moiety, decorated with a flexible N-alkyl side chain bearing a terminal ammonium ion, are a known class of inhibitors. Using computer modelling, we revised the binding model for this class of TR inhibitors predicting simultaneous interactions of the ammonium ion-terminated N-alkyl chain with Glu18 as well as Glu465'/Glu466' of the second subunit of the homodimer, whereas the hydrophobic substituent of the aniline ring occupies the "mepacrine binding site" near Trp21 and Met113. Systematic alteration of the carboxylate-binding fragments and the diaryl sulfide core of the inhibitor scaffold provided evidence for the proposed binding mode. In vitro studies showed IC(50) values in the low micromolar to submicromolar range against Trypanosoma brucei rhodesiense as well as the malaria parasite Plasmodium falciparum.     

Generation of candidate ligands for nicotinic acetylcholine receptors via in situ click chemistry with a soluble acetylcholine binding protein template

Nicotinic acetylcholine receptors (nAChRs), which are responsible for mediating key physiological functions, are ubiquitous in the central and peripheral nervous systems. As members of the Cys loop ligand-gated ion channel family, neuronal nAChRs are pentameric, composed of various permutations of α (α2 to α10) and β (β2 to β4) subunits forming functional heteromeric or homomeric receptors. Diversity in nAChR subunit composition complicates the development of selective ligands for specific subtypes, since the five binding sites reside at the subunit interfaces. The acetylcholine binding protein (AChBP), a soluble extracellular domain homologue secreted by mollusks, serves as a general structural surrogate for the nAChRs. In this work, homomeric AChBPs from Lymnaea and Aplysia snails were used as in situ templates for the generation of novel and potent ligands that selectively bind to these proteins. The cycloaddition reaction between building-block azides and alkynes to form stable 1,2,3-triazoles was used to generate the leads. The extent of triazole formation on the AChBP template correlated with the affinity of the triazole product for the nicotinic ligand binding site. Instead of the in situ protein-templated azide-alkyne cycloaddition reaction occurring at a localized, sequestered enzyme active center as previously shown, we demonstrate that the in situ reaction can take place at the subunit interfaces of an oligomeric protein and can thus be used as a tool for identifying novel candidate nAChR ligands. The crystal structure of one of the in situ-formed triazole-AChBP complexes shows binding poses and molecular determinants of interactions predicted from structures of known agonists and antagonists. Hence, the click chemistry approach with an in situ template of a receptor provides a novel synthetic avenue for generating candidate agonists and antagonists for ligand-gated ion channels.     

Global Doppler frequency shift detection with near-resonant interferometry

The recent development in measuring 2D Doppler shift distributions for flow velocimetry using the dispersive properties of atomic line filters is presented. On the basis of velocity field measurements on a subsonic jet flow and a tip vortex flow in a medium-sized wind tunnel, the technique was assessed. Atomic line filters near a resonant transition combine imaging capabilities with a sharp frequency cutoff and an associated region of strong anomalous dispersion. While conventional Doppler global velocimetry relies on the absorption of the filter to convert frequency shifts to intensity variations, near-resonant interferometry uses its dispersion to detect frequency shifts as phase changes in an interference pattern. In the present setup, an iodine vapor cell in an imaging Michelson interferometer is used. With the illuminating laser frequency tuned near a resonant transition, the cell’s dispersion converts the frequency content of the field of view into a distortion of the carrier-fringe pattern recorded at the image plane of the interferometer. The phase distribution in the fringe images is reconstructed by filtering the individual images with a 2D Gabor filter pair tuned to the spatial frequencies of the basic carrier-fringe pattern. The post-processing is concluded with subsequent phase-unwrapping and subtraction of the carrier reference fringe phase. The method and the setup were demonstrated and calibrated experimentally on a rotating disc. The capability of the technique to operate in a real experimental environment was validated in a free subsonic jet and a tip vortex flow behind a wing section in a medium-sized wind tunnel facility. The measurements were found to be in generally good agreement with the theoretically predicted system characteristics and the reference measurements. As with other Doppler global techniques, the stability of the pulsed laser system and the secondary scattering in the test volume were identified as the main error sources.