Kinetics and mechanism of *NO2 reacting with various oxidation states of myoglobin

Nitrogen dioxide ((*)NO(2)) participates in a variety of biological reactions. Of great interest are the reactions of (*)NO(2) with oxymyoglobin and oxyhemoglobin, which are the predominant hemeproteins in biological systems. Although these reactions occur rapidly during the nitrite-catalyzed autoxidation of hemeproteins, their roles in systems producing (*)NO(2) in the presence of these hemeproteins have been greatly underestimated. In the present study, we employed pulse radiolysis to study directly the kinetics and mechanism of the reaction of oxymyoglobin (MbFe(II)O(2)) with (*)NO(2). The rate constant of this reaction was determined to be (4.5 +/- 0.3) x 10(7) M(-1)s(-1), and is among the highest rate constants measured for (*)NO(2) with any biomolecule at pH 7.4. The interconversion among the various oxidation states of myoglobin that is prompted by nitrogen oxide species is remarkable. The reaction of MbFe(II)O(2) with (*)NO(2) forms MbFe(III)OONO(2), which undergoes rapid heterolysis along the O-O bond to yield MbFe(V)=O and NO(3-). The perferryl-myoglobin (MbFe(V)=O) transforms rapidly into the ferryl species that has a radical site on the globin ((*)MbFe(IV)=O). The latter oxidizes another oxymyoglobin (10(4) M(-1)s(-1) < k(17) < 10(7) M(-1)s(-1)) and generates equal amounts of ferrylmyoglobin and metmyoglobin. At much longer times, the ferrylmyoglobin disappears through a relatively slow comproportionation with oxymyoglobin (k(18) = 21.3 +/- 5.3 M(-1)s(-1)). Eventually, each (*)NO(2) radical converts three oxymyoglobin molecules into metmyoglobin. The same intermediate, namely MbFe(III)OONO(2), is also formed via the reaction peroxynitrate (O(2)NOO(-)/O(2)NOOH) with metmyoglobin (k(19) = (4.6 +/- 0.3) x 10(4) M(-1)s(-1)). The reaction of (*)NO(2) with ferrylmyoglobin (k(20) = (1.2 +/- 0.2) x 10(7) M(-1)s(-1)) yields MbFe(III)ONO(2), which in turn dissociates (k(21) = 190 +/- 20 s(-1)) into metmyoglobin and NO(3-). This rate constant was found to be the same as that measured for the decay of the intermediate formed in the reaction of MbFe(II)O(2) with (*)NO, which suggests that MbFe(III)ONO(2) is the intermediate observed in both processes. This conclusion is supported by thermokinetic arguments. The present results suggest that hemeproteins may detoxify (*)NO(2) and thus preempt deleterious processes, such as nitration of proteins. Such a possibility is substantiated by the observation that the reactions of (*)NO(2) with the various oxidation states of myoglobin lead to the formation of metmyoglobin, which, though not functional in the gas transport, is nevertheless nontoxic at physiological pH.     

Moduli spaces of arrangements of 10 projective lines with quadruple points

We classify moduli spaces of arrangements of 10 lines with quadruple points. We show that moduli spaces of arrangements of 10 lines with quadruple points may consist of more than 2 disconnected components, namely 3 or 4 distinct points. We also present defining equations to those arrangements whose moduli spaces are still reducible after taking quotients of complex conjugations.     

Interactions between block copolymers and single-walled carbon nanotubes in aqueous solutions: a small-angle neutron scattering study

The amphiphilic copolymers of the Pluronic family are known to be excellent dispersants for single-walled carbon nanotubes (SWCNT) in water, especially F108 and F127, which have rather long end-blocks of poly(ethylene oxide) (PEO). In this study, the structure of the CNT/polymer hybrid formed in water is evaluated by measurements of small-angle neutron scattering (SANS) with contrast variation, as supported by cryo-transmission electron microscopy (cryo-TEM) imaging. The homogeneous, stable, inklike dispersions exhibited very small isolated bundles of carbon nanotubes in cryo-TEM images. SANS experiments were conducted at different D(2)O/H(2)O content of the dispersing solvent. The data for both systems showed surprisingly minimal intensity values at 70% D(2)O solvent composition, which is much higher than the expected value of 17% D(2)O that is based on the scattering length density (SLD) of PEO. At this near match point, the data exhibited a q(-1) power law relation of intensity to the scattering vector (q), indicating rodlike entities. Two models are evaluated, as extensions to Pederson's block copolymer micelles models. One is loosely adsorbed polymer chains on a rodlike CNT bundle. In the other, the hydrophobic block is considered to form a continuous hydrated shell on the CNT surface, whereas the hydrophilic blocks emanate into the solvent. Both models were found to fit the experimental data reasonably well. The model fit required special considerations of the tight association of water molecules around PEO chains and slight isotopic selectivity.     

Precipitation membranes — A review

Precipitation membranes are generated exclusively by diffusion-controlled precipitation. They form an asymmetrical barrier with an electrical polarity. Their electrical charges, which are charges of adsorbed ions, are not fixed and can easily and reversibly be desorbed. In the conditioned state a relatively large potential difference develops, the membranes rectify electrical current and display specific ion permeabilities. A unique property of these membranes allows determination of the permeability of single ionic species. The permeability of OH^? was thus found to be markedly greater than that of H⁺, Precipitation membrane effects may be involved in rectification phenomena in biological membranes such as the frog skin.     

Structure-activity relationships of antibacterial acyl-lysine oligomers

We describe structure-activity relationships that emerged from biophysical data obtained with a library of antimicrobial peptide mimetics composed of 103 oligoacyllysines (OAKs) designed to pin down the importance of hydrophobicity (H) and charge (Q). Based on results obtained with OAKs displaying minimal inhibitory concentration < or = 3 microM, the data indicate that potent inhibitory activity of the gram-negative Escherichia coli and the gram-positive Staphylococcus aureus required a relatively narrow yet distinct window of HQ values where the acyl length played multiple and critical roles, both in molecular organization and in selective activity. Thus, incorporation of long-but not short-acyl chains within a peptide backbone is shown to lead to rigid supramolecular organization responsible for poor antibacterial activity and enhanced hemolytic activity. However, sequence manipulations, including introduction of a tandem lysine motif into the oligomer backbone, enabled disassembly of aggregated OAKs and subsequently revealed tiny, nonhemolytic, yet potent antibacterial derivatives.     

Kinetics and mechanism of peroxyl radical reactions with nitroxides

Cyclic nitroxides (>NO*) are stable radicals of diverse size, charge, lipophilicility, and cell permeability, which provide protection against oxidative stress via various mechanisms including SOD-mimic activity, oxidation of reduced transition metals and detoxification of oxygen- and nitrogen-centered radicals. However, there is no agreement regarding the reaction of nitroxides with peroxyl radicals, and many controversies in the literature exist. The question of whether nitroxides can protect by scavenging peroxyl radicals is important because peroxyl radicals are formed in biological systems. To further elucidate the mechanism(s) underlying the antioxidative effects of nitroxides, we studied by pulse radiolysis the reaction kinetics of piperidine, pyrrolidine, and oxazolidine nitroxides with several alkyl peroxyl radicals. It is demonstrated that nitroxides mainly reduce alkyl peroxyl radicals forming the respective oxoammonium cations (>N+=O). The most efficient scavenger of peroxyl radicals is 2,2,6,6-tetramethylpiperidine-N-oxyl (TPO), which has the lowest oxidation potential among the nitroxides tested in the present study. The rate constants of peroxyl reduction are in the order CH2(OH)OO*>CH3OO*>t-BuOO*, which correlate with the oxidation potential of these peroxyl radicals. The rate constants for TPO vary between 2.8x10(7) and 1.0x10(8) M-1 s-1 and for 3-carbamoylproxyl (3-CP) between 8.1x10(5) and 9.0x10(6) M-1 s-1. The efficacy of protection of nitroxides against inactivation of glucose oxidase caused by peroxyl radicals was studied. The results demonstrate a clear correlation between the kinetic features of the nitroxides and their ability to inhibit biological damage inflicted by peroxyl radicals.     

Cognitive‐Performance Recovery of Alzheimer's Disease Model Mice by Modulation of Early Soluble Amyloidal Assemblies

A rationally designed oligomerization inhibitor interacts with early intermediate assemblies of amyloid‐β polypeptide (Aβ) through the aromatic elements and inhibits their assembly into the toxic oligomers that cause Alzheimer's disease by a unique C^α‐methylation β‐breakage strategy. The electrostatic potential of the low‐energy conformation of the dipeptide inhibitor bound to Aβ is shown.

     

Properties that Four-Dimensional Objects Cannot Have

The paper argues that four-dimensionalism is incompatible with the existence of “additively cumulative” properties, including mass, volume, and electrical charge. These properties add up over disjoint objects: for example, the mass of a whole composed of two disjoint objects is a sum of the individual masses of the objects. The difficulty with such properties for four-dimensionalism stems from the way this theory makes persistence depend on the existence of disjoint objects at disjoint times. I consider various possible responses to this difficulty and conclude that they all fail.     

On the Degeneration, Regeneration and Braid Monodromy of T×T

This paper is the first in a series of three papers concerning the surface T×T. Here we study the degeneration of T×T and the regeneration of its degenerated object. We also study the braid monodromy and its regeneration.