Mapping of possible prion protein self-interaction domains using peptide arrays

Background  

The common event in transmissible spongiform encephalopathies (TSEs) or prion diseases is the conversion of host-encoded protease sensitive cellular prion protein (PrP^C) into strain dependent isoforms of scrapie associated protease resistant isoform (PrP^Sc) of prion protein (PrP). These processes are determined by similarities as well as strain dependent variations in the PrP structure. Selective self-interaction between PrP molecules is the most probable basis for initiation of these processes, potentially influenced by chaperone molecules, however the mechanisms behind these processes are far from understood. We previously determined that polymorphisms do not affect initial PrP^C to PrP^Sc binding but rather modulate a subsequent step in the conversion process. Determining possible sites of self-interaction could elucidate which amino acid(s) or amino acid sequences contribute to binding and further conversion into other isoforms. To this end, ovine – and bovine PrP peptide-arrays consisting of 15-mer overlapping peptides were probed with recombinant sheep PrP^C fused to maltose binding protein (MBP-PrP).     

Morphology-dependent stimulated Raman scattering (MDSRS)

A novel non-linear Raman spectroscopic technique, which can be used to characterize the chemical composition of the interface region of volatile aerosol particles, is described. The technique is morphology-dependent stimulated Raman scattering (MDSRS). We discuss the phenomenology behind this new optical probe, and present experimental results which show that this technique can be used as quantitative spectroscopic tool. We outline the potential application of MDSRS to in situ gas—aerosol kinetics and dynamics studies.     

Total Synthesis of (±)-Nocardione A and (±)-Nocardione B, Two Cdc25B Tyrosine Phosphatase Inhibitors

Quinones are biologically important compounds, especially because of their cytotoxic and pharmacological action. The antitumor activities of the quinones, including naphthoquinones1, were revealed more than two decades ago when the National Cancer Institute published a report in which 1500 synthetic and nature quinones were screened. Some natural naphthoquinones were under development for antitumor agents2. The protein tyrosine phosphatases (PTPase) and dual phosphatases (DSPase) are key…     

Studies on photoinduced effects in pulse-electrodeposited Ag/Hg-1212/CdSe hetero-nanostructures

Metal/superconductor/semiconductor (Ag/Hg-1212/CdSe) hetero-nanostructures have been fabricated using pulse-electrodeposition technique and are characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy (SEM) studies. The junction capacitance of Ag/Hg-1212, Hg-1212/CdSe and Ag/Hg-1212/CdSe heterojunctions is measured in dark and under laser irradiation at room temperature. The nature of the junction formed and built-in-junction potentials were determined. The increase in carrier concentration across the junction due to photo-irradiation has been observed.     

Effect of laser irradiation of C-V characteristics of electrodeposited Ag/Tl-2223/CdSe hetero-nanostructures

One of the innovative technological directions for the high-temperature superconductors has been persued by fabricating the heteroepitaxial multilayer structures such as superconductor-semiconductor heterostructures. In the present investigation, metal/superconductor/semiconductor (Ag/Tl-2223/CdSe) hetero-nanostructures have successfully been fabricated using dc electrodeposition technique and were characterized by X-ray diffraction (XRD), full-width at half-maximum (FWHM) and scanning electron microscopy (SEM) studies. The measurement of junction capacitance as a function of biasing voltage was used for the estimation of junction built-in-potential (V _D) and to study the charge distribution in a heterojunction. The Mott-Schottky plots were measured for each junction in dark and under the photo-irradiation. The effect of laser irradiation on C-V characteristics of hetero-nanostructure has been studied.     

Glycopeptide and Oligosaccharide Libraries

Despite the burgeoning interest in the various biological functions and consequent therapeutic potential of the vast number of oligosaccharides found in nature on glycoproteins and cell surfaces, the development of combinatorial carbohydrate chemistry has not progressed as rapidly as expected. The reason for this imbalance is rooted in the difficulty of oligosaccharide assembly and analysis that renders synthesis a rather cumbersome endeavor. Parallel approaches that generate series of analogous compounds rather than real libraries have therefore typically been used. Since generally low affinity is obtained for interactions between carbohydrate receptors and modified oligosaccharides designed as mimetics of natural carbohydrate ligands, glycopeptides have been explored as alternative mimics. Glycopeptides have been proven in many cases to be superior ligands with higher affinity for a receptor than the natural carbohydrate ligand. High-affinity glycopeptide ligands have been found for several types of receptors including the E-, P-, and L-selectins, toxins, glycohydrolases, bacterial adhesins, and the mannose-6-phosphate receptor. Furthermore, the assembly of glycopeptides is considerably more facile than that of oligosaccharides and the process can be adapted to combinatorial synthesis with either glycosylated amino acid building blocks or by direct glycosylation of peptide templates. The application of the split and combine approach using ladder synthesis has allowed the generation of very large numbers of compounds which could be analyzed and screened for binding of receptors on solid phase. This powerful technique can be used generally for the identification and analysis of the complex interaction between the carbohydrates and their receptors.     

Viscous stabilization of 2D drainage displacements with trapping

We investigate the stabilization mechanisms due to viscous forces in the invasion front during drainage displacement in two-dimensional porous media using a network simulator. We find that in horizontal displacement the capillary pressure difference between two different points along the front varies almost linearly as a function of height separation in the direction of the displacement. The numerical result supports arguments taking into account the loopless displacement pattern where nonwetting fluid flows in separate strands (paths). As a consequence, we show that existing theories developed for viscous stabilization are not compatible with drainage when loopless strands dominate the displacement process.     

Effects of Light Energy and Reducing Agents on C60‐Mediated Photosensitizing Reactions

Many biomolecules contain photoactive reducing agents, such as reduced nicotinamide adenine dinucleotide (NADH) and 6‐thioguanine (6‐TG) incorporated into DNA through drug metabolism. These reducing agents may produce reactive oxygen species under UVA irradiation or act as electron donors in various media. The interactions of C₆₀ fullerenes with biological reductants and light energy, especially via the Type‐I electron‐transfer mechanism, are not fully understood although these factors are often involved in toxicity assessments. The two reductants employed in this work were NADH for aqueous solutions and 6‐TG for organic solvents. Using steady‐state photolysis and electrochemical techniques, we showed that under visible light irradiation, the presence of reducing agents enhanced C₆₀‐mediated Type‐I reactions that generate superoxide anion (O₂^.?) at the expense of singlet oxygen (¹O₂) production. The quantum yield of O₂^.? production upon visible light irradiation of C₆₀ is estimated below 0.2 in dipolar aprotic media, indicating that the majority of triplet C₆₀ deactivate via Type‐II pathway. Upon UVA irradiation, however, both C₆₀ and NADH undergo photochemical reactions to produce O₂^.?, which could lead to a possible synergistic toxicity effects. C₆₀ photosensitization via Type‐I pathway is not observed in the absence of reducing agents.     

Enzymatic Oxygen Microsensor Based on Bilirubin Oxidase Applied to Microbial Fuel Cells Analysis

A selective oxygen biosensor based on bilirubin oxidase (BOx) was developed. The sensor was used for determining oxygen profiles in a membraneless, single‐chamber microbial fuel cell (SCMFC), fed with raw wastewater. The linear response of the sensor was optimized by a diffusion layer of silica gel. A computer‐controlled stage was used to obtain accurate and precise measurements. Oxygen concentration in biofilms covering electrodes was measured, showing 3 mg L^?1 of O₂ in the bulk solution, decreasing to 0 mg L^?1 in the cathodic biofilm. The MFC generated power in the range of 0–0.08 mW, associated to the oxygen content.