Global expression analysis of CESA and CSL genes in Arabidopsis

We have used Affymetrix gene chips to measure the expression of 10 CESA and 29 CSL genes of Arabidopsis in different developmental stages or organs. These measurements reveal that many of the genes exhibit different levels of expression in the various organs. While several CESA genes are highly expressed in all the tissues examined, very few CSL genes approach such high levels of expression. This suggests that the CSL genes either encode enzymes for the synthesis of minor components of cell walls or are expressed only in specific cell types. The expression data also highlights the potential importance of the CESA genes for primary and secondary cell wall formation during different developmental stages and in the different organs examined.     

Solvent extraction and lanthanide complexation studies with new terdentate ligands containing two 1,3,5-triazine moieties

The extracting agent 2,6-bis(4,6-di-pivaloylamino-1,3,5-triazin-2-yl)-pyridine (L(5)) in n-octanol was found, in synergy with 2-bromodecanoic acid, to give D(Am)/D(Eu) separation factors (SFs) between 2.4 and 3.7 when used to extract the metal ions from 0.02-0.12 M HNO(3). Slightly higher SFs (4-6) were obtained in the absence of the synergist when the ligand was used to extract Am(III) and Eu(III) from 0.98 M HNO(3). In order to investigate the possible nature of the extracted species crystal structures of L(5) and the complex formed between Yb(III) with 2,6-bis(4,6-di-amino-1,3,5-triazin-2-yl)-pyridine (L(4)) were also determined. The structure of L(5) shows 3 methanol solvent molecules all of which form 2 or 3 hydrogen bonds with triazine nitrogen atoms, amide nitrogen or oxygen atoms, or pyridine nitrogen atoms. However, L(5) is relatively unstable in metal complexation reactions and loses amide groups to form the parent tetramine L(4). The crystal structure of Yb(L(4))(NO(3))(3) shows ytterbium in a 9-coordinate environment being bonded to three donor atoms of the ligand and three bidentate nitrate ions. The solvent extraction properties of L(4) and L(5) are far inferior to those found for the 2,6-bis-(1,2,4-triazin-3-yl)-pyridines (L(1)) which have SF values of ca. 140 and theoretical calculations have been made to compare the electronic properties of the ligands. The electronic charge distribution in L(4) and L(5) is similar to that found in other terdentate ligands such as terpyridine which have equally poor extraction properties and suggests that the unique properties of L(1) evolve from the presence of two adjacent nitrogen atoms in the triazine rings.     

SINGLE-STRAND BREAKS IN THE DNA OF THE uvrA AND uvrB STRAINS OF ESCHERICHIA COLI K-12 AFTER ULTRAVIOLET IRRADIATION

Abstract— DNA single-strand breaks were produced in uvrA and uvrB strains of E. coli K-12 after UV (254 nm) irradiation. These breaks appear to be produced both directly by photochemical events, and by a temperature-dependent process. Cyclobutane-type pyrimidine dimers are probably not the photoproducts that lead to the temperature-dependent breaks, since photoreactivation had no detectable effect on the final yield of breaks. The DNA strand breaks appear to be repairable by a process that requires DNA polymerase I and polynucleotide ligase, but not the recA, recB, recF, lexA 101 or uvrD gene products. We hypothesize that these temperature-dependent breaks occur either as a result of breakdown of a thermolabile photoproduct, or as the initial endonucleolytic event of a uvrA , uvrB -independent excision repair process that acts on a UV photoproduct other than the cyclobutane-type pyrimidine dimer.     

Accuracy of high‐order density‐based compressible methods in low Mach vortical flows

At low Mach numbers, Godunov‐type approaches, based on the method of lines, suffer from an accuracy problem. This paper shows the importance of using the low Mach number correction in Godunov‐type methods for simulations involving low Mach numbers by utilising a new, well‐posed, two‐dimensional, two‐mode Kelvin–Helmholtz test case. Four independent codes have been used, enabling the examination of several numerical schemes. The second‐order and fifth‐order accurate Godunov‐type methods show that the vortex‐pairing process can be captured on a low resolution with the low Mach number correction applied down to 0.002. The results are compared without the low Mach number correction and also three other methods, a Lagrange‐remap method, a fifth‐order accurate in space and time finite difference type method based on the wave propagation algorithm, and fifth‐order spatial and third‐order temporal accurate finite volume Monotone Upwind Scheme for Conservation Laws (MUSCL) approach based on the Godunov method and Simple Low Dissipation Advection Upstream Splitting Method (SLAU) numerical flux with low Mach capture property. The ability of the compressible flow solver of the commercial software, ANSYS FLUENT , in solving low Mach flows is also demonstrated for the two time‐stepping methods provided in the compressible flow solver, implicit and explicit. Results demonstrate clearly that a low Mach correction is required for all algorithms except the Lagrange‐remap approach, where dissipation is independent of Mach number. © 2013 Crown copyright. International Journal for Numerical Methods in Fluids. © 2013 John Wiley & Sons, Ltd.     

Evaluation of calcium carbonate in eggshells using thermal analysis

The eggshell of the hen is an important structure which provides protection for the developing chick, and also a container for the egg in the food industry. Egg breakage can reach up to 10% of total egg production, causing considerable economic losses. The eggshell consists of membranes, composed mainly of proteins, and the mineral shell composed mainly of the calcite polymorph of CaCO₃. The average CaCO₃ content of a chicken eggshell is between 93 and 97%, depending on animal genotype, age, housing system of laying hens and mineral nutrition. In the present study, eggs of the same breed and approximately same age were collected from four different production systems: organic farming, free-range production, deep litter system and battery cage system. The CaCO₃ content was determined by the standard titration method and by atomic absorption spectroscopy. Thermal properties of dried eggshell powder were measured by thermogravimetric measurements between 30 and 900 °C in air, showing a significant mass loss of?≈?43% between 600 and 850 °C corresponding to the decomposition of CaCO₃ to CaO and CO₂. The relations between the thermal mass loss and CaCO₃ content determined by the titration method/atomic absorption spectroscopy were studied using predictive models fitted by the linear regression method. A good prediction ability with an average prediction error of 0.01% was obtained between CaCO₃ determined by titration and the thermal mass loss, indicating that TG could provide a reliable method for evaluation of CaCO₃ content in eggshells.

     

Untersuchungen des Hydroxylammonium-Fluorogallats

Summary Crystals of (NH₃OH)₃GaF₆ have been isolated from aqueous solution. The compound crystallizes triclinic, with cell parametersa=6.539(5) Å,b=6.924(5) Å,c=9.403(1) Å, =87.01(9)°, =83.98(8)°, =70.28(8)°. The thermal decomposition was studied by TG and DSC analysis.

     

One‐dimensional chains in sodium tetraphenylphosphonium bis(2‐mercapto‐4‐methylphenolato‐O,S)oxovanadate(IV)

The title compound, Na(C₂₄H₂₀P)[V(C₇H₆OS)₂O], contains oxovanadium(IV) in a square‐pyramidal coordination geometry with a basal plane consisting of a cis‐S₂O₂ donor group. The [VO(mmp)₂]^2? (mmpH₂ = 2‐mercapto‐4‐methyl­phenol) units are linked into infinite chains by the sodium ions.     

Synthesis and structure of hydroxylammonium fluoroaluminate

Abstract  

Hydroxylammonium fluoroaluminate with the formula (NH₃OH)₂AlF₅ was synthesized by the reaction of solid NH₃OHF and an aqueous solution of aluminum in HF, and its structure was determined by single-crystal X-ray diffraction. The structure consists of NH₃OH⁺ cations and centrosymmetrical AlF₆ octahedra, which are formed by sharing two opposite corners connected in polymeric (AlF₅)_n²⁻ anions. Oxygen and nitrogen atoms of hydroxylammonium cations are donors of hydrogen bonds to terminal fluorine atoms of fluoroaluminate chains. The compound crystallizes monoclinic P2/c, with cell parameters a = 10.8675(3) ?, b = 7.3098(2) ?, c = 7.2071(2) ?, and β = 91.080(2)°. The thermal decomposition of the compound was studied by TG, DSC, and X-ray powder diffraction. By controlled heating of (NH₃OH)₂AlF₅, a new compound with the formula (NH₃OH)AlF₄ was obtained, and the final product of the decomposition is γ-AlF₃.     

Silver metallation of hen egg white lysozyme: X-ray crystal structure and NMR studies

The X-ray crystal structure, NMR binding studies, and enzyme activity of silver(I) metallated hen egg white lysozyme are presented. Primary bonding of silver is observed through His15 with secondary bonding interactions coming from nearby Arg14 and Asp87. A covalently bound nitrate completes a four coordinate binding pocket.