Complex genetic evolution of artificial self‐replicators in cellular automata

It is widely believed that evolutionary dynamics of artificial self‐replicators realized in cellular automata (CA) are limited in diversity and adaptation. Contrary to this view, we show that complex genetic evolution may occur within simple CA. The evolving self‐replicating loops (“evoloops”) we investigate exhibit significant diversity in macro‐scale morphologies and mutational biases, undergoing nontrivial genetic adaptation by maximizing colony density and enhancing sustainability against other species. Nonmutable subsequences enable genetic operations that alter fitness differentials and promote long‐term evolutionary exploration. These results demonstrate a unique example of genetic evolution hierarchically emerging from local interactions between elements much smaller than individual replicators. © 2004 Wiley Periodicals, Inc. Complexity 10: 33–39, 2004     

New methods and reagents in organic synthesis. 56. Total syntheses of patellamides B and C,cytotoxic cyclic peptides from a tunicate 2. Their real structures have been determined by their syntheses.

The proposed structures of patellamides B and C, cytotoxic lipophilic cyclic peptides from a marine tunicate, have been revised on the basis of the spectral data of their partial hydrolysates, and their revised structures have been synthetically confirmed by the use of diphenyl phosphorazidate(DPPA) and diethyl phosphorocyanidate(DEPC).     

Diethyl phosphorocyanidated (DEPC). A novel reagent for the classical Strecker's α-amino nitrile synthesis

Diethyl phosphorocyanidate (DEPC) can be efficiently used for the synthesis of α-amino nitriles from carbonyl compounds and amines. The reaction may be called a modified Strecker synthesis.     

Determination of fluorine in standard rocks by photon activation analysis

A highly sensitive determination of fluorine in standard rocks by photon activation using the¹⁹F(,n)¹⁸F reaction combined with pyrohydrolysis for the separation of¹⁸F has been reported. The irradiation energy was operated at 20 MeV to avoid the interference from Na, because Na is one of the major element in rocks and¹⁸F is also produced from Na via²³Na(,n)¹⁸F reaction above its threshold energy, 20.9 MeV. After irradiation, fluorine was extracted by pyrohydrolysis and separated as LaF₃ precipitate. It was ascertained that the average recovery of fluorine in standard rocks was about 90% and the precipitate was of high radiochemical purity. This method was applied to the analysis of ten GSJ rock reference samples and two USGS standard rocks issued by the Geological Survey of Japan and the United States Geological Survey, respectively. The detection limit of this method was 0.02 g/g, and the results obtained by this method were in good agreement with the recommended values. This method was easily applied to the determination of a few ppm level of fluorine in rock samples, such as ultrabasic rock and feldspar.     

Efficient eosin y dye-sensitized solar cell containing Br-/Br3- electrolyte

We found that Br-/Br3- is more suitable than an I-/I3- couple in dye-sensitized solar cells in terms of higher open-circuit photovoltage (Voc) production and higher overall energy conversion efficiency (eta) if the dye sensitizer has a more positive potential than that of Br-/Br3-. Under simulated AM1.5 one sun, an eosin Y dye-sensitized solar cell containing 0.4 M LiBr + 0.04 M Br2 electrolyte in acetonitrile yielded a short-circuit photocurrent (Jsc) of 4.63 mA cm(-2), Voc of 0.813 V, and fill factor (FF) of 0.693, corresponding to 2.61% of eta. Under the same conditions except for the electrolyte 0.4 M LiI + 0.04 M I2 in acetonitrile instead, the device produced 1.67% of eta (Jsc = 5.15 mA cm(-2), Voc = 0.451 V, FF = 0.721). Replacement of I-/I3- with Br-/Br3- in eosin Y dye-sensitized solar cells yielded a significant increase in Voc offset by slight decreases in Jsc and FF, leading to an increase in eta by 56%. The significant gain in Voc was attributed to the enlarged energy level difference between the redox potential of the electrolyte and the Fermi level of TiO2 and the suppressed charge recombination as well. The rate for charge recombination between bromine and the injected electrons was determined to be first order in bromine.     

Uneven distribution of ventilation—perfusion ratios in lungs estimated by a modified Newton method

The uneven distribution of ventilation—perfusion ratios ( ) in diseased lungs is the major cause of arterial hypoxemia. Farhi and Yokoyama (1967) and Yokoyama and Farhi (1967) were the first who used physiologically inert gases as indicator gases to assess the uneven distribution of Wagner and his coworkers in San Diego (1977b) extended the method and elaborated the multiple inert gas elimination technique in which blood flows in 50 compartments with different were estimated based on data for 6 indicator gases. They analyzed the indicator gas data through an enforced smoothing technique with the ridge regression. To get smooth distributions, they introduced a weighting function for compartments and an additional treatment for the non-negativity of the blood flow. The weighting function was empirically obtained. We analyzed the data without putting any weights on compartments nor any additional treatment for non-negativity of blood flow. The analytical method in the present study was a modified Newton method, which is one of the enforced smoothing method. Our method was capable of recovering all distribution patterns that were found through the method reported by Wagner et al. (1977b).     

Structure and crystallization of sub-elementary fibrils of bacterial cellulose isolated by using a fluorescent brightening agent

The structure and crystallization of carefully isolated sub-elementary fibrils (SEFs) of bacterial cellulose have been investigated using TEM, WAXD, and high-resolution solid-state ¹³C NMR. The addition of a suitable amount of fluorescent brightener (FB) to the incubation medium of Acetobacter xylinum effectively suppressed the aggregation of the SEFs into the microfibrils, as previously reported. However, this study confirmed for the first time that serious structural change in the SEFs occurs during the removal of excess FB by washing with buffer solutions having pH values higher than 6 or with the alkaline aqueous solution that was frequently used in previous studies. In contrast, the isolation of unmodified SEFs was successfully performed by utilizing a washing protocol employing pH 7 citrate–phosphate buffer solution containing 1% sodium dodecyl sulfate. High-resolution solid-state ¹³C NMR and WAXD measurements revealed that the SEFs thus isolated are in the noncrystalline state in which the pyranose rings of the almost parallel cellulose chains appear to be stacked on each other. The respective CH₂OH groups of the SEFs adopt the gt conformation instead of the tg conformation found in cellulose I _α and I _β crystals, and undergo significantly enhanced molecular motion in the absence of intermolecular hydrogen bonding associated with these groups. The main chains are also subject to rapid motional fluctuations while maintaining the parallel orientation of the respective chains, indicating that the SEFs have a liquid crystal-like structure with high molecular mobility. Moreover, the SEFs crystallize into cellulose I _β when the FB molecules that may adhere to the surface of the SEFs are removed by extraction with boiling 70 v/v% ethanol and 0.1N NaOH aqueous solution. On the basis of these results, the crystallization of the SEFs into the I _α and I _β forms is discussed, including the possible formation of the crystalline-noncrystalline periodic structure in native cellulose.     

Separation and purification of 99mTc from 99Mo produced by electron linear accelerator

The medical radionuclide ⁹⁹Mo was produced by the ¹⁰⁰Mo(γ,n) reaction using bremsstrahlung photons generated by an electron linear accelerator. The amount of ⁹⁹Mo produced was compared to that predicted by calculation using the particles and heavy ion transport code system. From the ⁹⁹Mo produced, highly pure ^99mTc was separated using the so-called technetium master milker, and the chemical yield of ^99mTc was 83–99 %. The installation of a new complex using this method and the electron linear accelerator with the preferable specification was suggested, and a possibility to supply the demand of ^99mTc was discussed and shown.

     

Synthesis and mechanochemical properties of biobased ABCBA-type pentablock copolymers comprising poly-d-lactide (A), poly-l-lactide (B) and poly(1,2-propylene succinate) (C)

The ABCBA pentablock copolymers (p-d -l -PPS) comprising poly(d -lactide) (PDLA: A), poly(l -lactide) (PLLA: B) and poly(propylene succinate) (PPS: C) were successfully synthesized by two-step ring-opening polymerization (ROP) of d - and l -lactide using a dihydroxy-terminated PPS as a macro-initiator. The pentablock copolymers revealed the high stereocomplex (sc) crystallinity, thermal stability and elastomeric property in their solution-cast films. It was found that the T_g was found to be proportional to the PPS content, whereas the T_m was proportional to their average block length. The thermal resistivity of the copolymer films was found to be as high as 202°C owing to their sc formation. The copolymers also showed improved stereocomplexibility compared to the enantiomeric mixtures of triblock copolymers (PLLA-PPS-PLLA and PDLA-PPS-PDLA) having similar PLLA and PDLA chain lengths. These pentablock copolymers can afford thermoplastic elastomers or flexible plastic materials having a 100% bio-based content, showing high heat-resistive property.