Synthesis of 2′-Deoxy-5-(isothiazol-5-yl)uridine and Its Interaction with the HSV-1 Thymidine Kinase

2′-Deoxy-5-(isothiazol-5-yl)uridine ( 12 ) was synthesized starting from 2′-deoxy-5-iodouridine using a Pd-catalysed cross-coupling reaction with propiolaldehyde diethyl acetal followed by deprotection and ring closure using thiosulfate. 2′-Deoxyuridine 12 has a particular place among the 5-heteroaryl-substituted 2′-deoxyuridines in that it has a high affinity for herpes simplex virus type 1 (HSV-1)-encoded thymidine kinase (TK) without antiviral activity. Biochemical studies revealed that 12 is a substrate for viral TK. We further investigated the interaction of 12 with the HSV-1 thymidine kinase. The conformation of 12 in solution was established by NMR spectroscopy. The most stable conformer 12A has the S-atom of the isothiazole ring placed in the neighbourhood of the C(4)?O group of the pyrimidine moiety. The compound was docked in its most stable conformation in the active site of HSV-1 TK and subjected to energy minimization. This demonstrated that the isothiazole moiety binds in a cavity lined by the side chains of Tyr-132, Arg-163, Ala-167, and Ala-168 and that the C(3) atom of the isothiazole moiety is located in close proximity of the phenolic O-atom of Tyr-132 and the aliphatic part of the Arg-163 side chain.     

A type 2 Ferrier rearrangement-based synthesis of d-myo-inositol 1,4,5-trisphosphate

The synthesis of d-myo-inositol 1,4,5-trisphosphate (InsP₃) from methyl α-d-glucopyranose, via a type 2 Ferrier rearrangement is reported. A key intermediate in this synthesis possesses orthogonal protecting groups at the 1-, 4- and 5-position, making it a versatile starting point for the synthesis of unnatural InsP₃ derivatives. Biological evaluation of the synthetic InsP₃ demonstrates that this compound evokes selective Ca²⁺ release via activation of InsP₃ receptors.     

In vitro evaluation of cytotoxic and inflammatory properties of silica nanoparticles of different sizes in murine RAW 264.7 macrophages

The biological response to four well-characterized amorphous silica nanoparticles was investigated in RAW 264.7 macrophages in view of their potential application as drug carriers to sites of inflammation. All silica nanoparticles-induced cell membrane damage, reduced metabolic activity, generated ROS and released various cytokines, but to different extents. Two silica nanoparticles of 34 nm (A and B) with different zetapotentials were more cytotoxic than (aggregated) 11 and 248 nm nanoparticles, while cytokines were mostly induced by the (aggregated) 11 nm and only one of the 34 nm nanoparticles (34A). The results indicate that specific silica nanoparticles may have counterproductive effects, for example when used as carriers of anti-inflammatory drugs. The physicochemical properties determining the response of nanoparticles vary for different responses, implying that a screening approach for the safe development of nanoparticles needs to consider the role of combinations of (dynamic) physicochemical properties and needs to include multiple toxicity endpoints.     

Wide tuning of silicon-on-insulator ring resonators with a liquid crystal cladding

Wide electrical tuning of silicon-on-insulator ring resonators is demonstrated using a top cladding layer of nematic liquid crystals. A tuning range of 31?nm is demonstrated for ring resonators guiding the TM mode, covering nearly the entire C-band of optical communications. Ring resonators guiding the TE mode can be tuned over 4.5?nm. The combination of a liquid crystal director calculation and a fully anisotropic mode solver confirms the interpretation of these experimental results. The realization of broad and low-power tuning in silicon-on-insulator opens up new opportunities in the field of tunable lasers, filters, and detectors.     

An upper bound on the cycle time of a stochastic marked graph using incomplete information on the transition firing time distributions

Stochastic marked graphs, a special class of stochastic timed Petri nets, are used for modelling and analyzing decision-free dynamic systems with uncertainties in timing. The model allows evaluating the performance of such systems under a cyclic process. Given the probabilistic characteristics of the transition times, the cycle time of the system can be determined from the initial marking. In this contribution, we compute an upper bound on the cycle time of a stochastic marked graph in case the probabilistic characteristics of the transition times are not fully specified.     

Humidity effects on calcium zirconate ceramics in electrochemical hydrogen cells

In the eighties, Iwahara discovered that doped Sr and Ba cerates show significant proton conduction, at high temperature, and in hydrogen- or water-containing atmosphere [1]. Begin ‘90 it was proved that also doped zirconates (Sr, Ba, Ca) join this family of proton conducting perovskites [2]. Within this group, indium doped CaZrO₃ is one of the more interesting materials for applications, being mechanically and chemically particularly stable, and producible in very dense form. Specifically, it was already succesfully incorporated in a hydrogen sensor for liquid aluminium [3]. In principle, this sensor works as a simple electrochemical hydrogen concentration cell described by Nernst. However, as already remarked phenomenologically from the beginning [1], a hydrogen concentration cell using these perovskites shows the theoretically predicted emf, only in the presence of humidity. In this paper we want to go deeper into the reasons for this phenomenon. Paper presented at the 2nd Euroconference on Solid State Ionics, Funchal, Madeira, Portugal, Sept. 10–16, 1995     

Isolation of berberine tannate using a chromatography activity-guided fractionation from root bark of Berberis hispanica Boiss. & Reut.

Root bark of Berberis hispanica Boiss. & Reut. constitutes an important source of alkaloids and is traditionally used in Algeria and Morocco in many herbal formulations particularly for the treatment of stomach infections and colon cancer. Activity-guided fractionation of Berberis extract is developed by step-gradient elution on column chromatography followed by preparative HPLC to isolate the most antistaphylococcal compound. Solvent extraction-activity screening indicates that ethanol should be used as the extracting solvent as it has exhibited the highest activity against Staphylococcus aureus(Rosenbach ATCC6538) followed by water extract, whereas no activity is recorded for acetone and hexane extracts. Screening of collected fractions from chromatographic separations indicates that the fraction presenting the highest antistaphylococcal activity is identified as berberine tannate by UV spectrum, melting point measurement and confirmed by liquid chromatography coupled to mass spectrometry (LC/MS). The minimal inhibition concentration value of berberine tannate against S. aureus is evaluated at 5?µg?mL^?1.     

Spatially resolved micro-X-ray fluorescence and micro-X-ray absorption fine structure study of a fractured granite bore core following a radiotracer experiment

Spatially resolved X-ray absorption and fluorescence investigation with a micrometer-scale resolution on actinide-containing samples provide information necessary for safety assessment of nuclear waste disposal. In this paper one example of such an experiment is presented. This example entails neptunium speciation in a fractured granite bore core from the Swedish Äspö Hard Rock Laboratory following a radiotracer experiment using µ-XAFS and µ-XRF. In order to probe micro-volumes below the surface in the granite samples and thereby avoid potential changes in the Np speciation during cutting of the bore core, a confocal irradiation–detection geometry is employed. µ-XAFS results for a selected granite bore core cross section with ~ 3 nmol Np/g reveal that Np, originally introduced as Np(V) in the tracer cocktail, is present in the granite in its reduced Np(IV) form. The Np(IV) is often present as particles, tens of µm in size. Elemental distribution maps show the tracer Np to be located in fissures and permeable channels not larger than 100 µm. The Np distribution appears often correlated with Zn also present in some fissures. We observe small granite fissures containing Fe (presumably Fe(II)), where we do not detect any Np. It is feasible that inflowing Np(V) has a shorter residence time in large fractures, while in the smaller fissures migration is slower, leading to longer residence times, i.e., reaction times, where it is reduced to less soluble Np(IV) and becomes thereby immobilized.     

A liquid chromatography – tandem mass spectrometry method to measure a selected panel of uremic retention solutes derived from endogenous and colonic microbial metabolism

Chronic kidney disease (CKD) is associated with an increased risk of mortality and cardiovascular disease, which is, at least partly, mediated by the accumulation of so-called uremic retention solutes. Although there has been an increasing interest in the behavior of these solutes, derived from both the endogenous and colonic microbial metabolism, methods to simultaneously and accurately measure a broad panel of relevant uremic retention solutes remain scarce.