Non-protein amino acids in peptide design

An overview of the use of non-protein amino acids in the design of conformationally well-defined peptides, based on work from the author’s laboratory, is discussed. The crystal structures of several designed oligopeptides illustrate the useα-aminoisobutyric acid (Aib) in the construction of helices, D-amino acids in the design of helix termination segments and^DPro-Xxx segments for nucleating ofβ-hairpin structures.β- andγ-amino acid residues have been used to expand the range of designed polypeptide structures. Dedicated to Professor C N R Rao on his 70th birthday     

Aromatic-aromatic interactions in crystal structures of helical peptide scaffolds containing projecting phenylalanine residues

Aromatic-aromatic interactions between phenylalanine side chains in peptides have been probed by the structure determination in crystals of three peptides: Boc-Val-Ala-Phe-Aib-Val-Ala-Phe-Aib-OMe, I; Boc-Val-Ala-Phe-Aib-Val-Ala-Phe-Aib-Val-Ala-Phe-Aib-OMe, II; Boc-Aib-Ala-Phe-Aib-Phe-Ala-Val-Aib-OMe, III. X-ray diffraction studies reveal that all three peptides adopt helical conformations in the solid state with the Phe side chains projecting outward. Interhelix association in the crystals is promoted by Phe-Phe interactions. A total of 15 unique aromatic pairs have been characterized in the three independent crystal structures. In peptides I and II, the aromatic side chains lie on the same face of the helix at i/i + 4 positions resulting in both intrahelix and interhelix aromatic interactions. In peptide III, the Phe side chains are placed on the opposite faces of the helix, resulting in exclusive intermolecular aromatic interactions. The distances between the centroids of aromatic pair ranges from 5.11 to 6.86 A, while the distance of closest approach of ring carbon atoms ranges from 3.27 to 4.59 A. Examples of T-shaped and parallel-displaced arrangements of aromatic pairs are observed, in addition to several examples of inclined arrangements. The results support the view that the interaction potential for a pair of aromatic rings is relatively broad and rugged with several minima of similar energies, separated by small activation barriers.     

A one-pot synthesis of novel sugar derived 5,6-dihydro-quinazolino[4,3-b]quinazolin-8-ones: an entry towards highly functionalized sugar-heterocyclic hybrids

An efficient and practical one-pot method for the synthesis of novel diversified sugar derived dihydro-quinazolino[4,3-b]quinazolin-8-ones has been reported. Various protected sugar hemiacetals were used to synthesize the hybrid tetracyclic ring system. The one-step reductive transformation of 2-(2-nitrophenyl)-3H-quinazolin-4-one with different sugar hemiacetals furnished the desired tetracyclic product in good yields and with high purity.     

A new spot test for cerium(IV)

Summary A new colour reaction for the detection of cerram(IV) which can be carried out both in a test tube and on a spot plate has been described. The test solution is treated with methylene blue in nitric acid solution (11) to form a rose-red colour. This simple procedure has an advantage over the existing tests in that it is applicable in the presence of oxidising agents like chromium(VI), vanadium(V), nitrate, perchlorate and of coloured ions like copper(II), cobalt(II), nickel(II), chromium(III), iron(III), vanadium(IV), uranium(VI).

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Zusammenfassung Eine neue, sowohl in der Eprouvette wie auf der Tüpfelplatte ausführbare Farbreaktion zum Nachweis von Cer(IV) wurde angegeben. Die Probelösung wird mit salpetersaurer Methylenblaulösung behandelt und gibt eine rosarote Färbung. Die Reaktion hat gegenüber bekannten Tests den Vorteil, in Gegenwart von Oxydationsmitteln wie Cr(VI), V(V), NO₃ ^–, ClO₄ ^– bzw. in Anwesenheit gefärbter Ionen wie Cu(II), Co(II), Ni(II), Cr(III), Fe(III), V(IV) oder U(VI) anwendbar zu sein.

     

Phosphoramidite approach for the synthesis of cardiolipin

A phosphoramidite approach was utilized for the first time to synthesize cardiolipin. Optically active 1,2-di-O-acyl-sn-glycerol was coupled with 2-O-protected glycerols utilizing mono- and bifunctional phosphitylating agents to yield, after final removal of protecting groups, the title compound.     

Extraction of actinides and fission products by octyl(phenyl)-N,N-diisobutylcarbamoylmethyl-phosphine oxide from nitric acid media

Extraction of promethium(III), uranium(VI), plutonium(IV), americium(III), zirconium(IV), ruthenium(III), iron(III) and palladium(II) has been carried out with a mixture of octyl(phenyl)-N,N-diisobutylcarbamoylmethylphosphine oxide (CMPO) and tributyl phosphate (TBP) in dodecane. The effects of nitric acid, TBP and CMPO concentrations on the extraction of these metal ions have been studied. The nature of the species of the above metal ions extracted into the organic phase has been suggested.     

Gold nanoparticle networks with photoresponsive interparticle spacings

Photoresponsive gold nanoparticle networks were prepared by functionalizing them with azobenzene derivatives. A network can be formed when a linker molecule constituting the azobenzene moiety suitably derivatized on either side with gold surface sensitive groups such as thiols and amines is added to the nanoparticle solution. It is shown that the interparticle spacing in the networks could be controlled by the reversible trans-cis isomerization of the azobenzene moiety induced by UV and visible light, respectively. The photoinduced variation in the interparticle spacings is inferred by the changes in the optical spectra of the gold nanoparticles which display a red or blue shift in the surface plasmon resonance peak depending on a decrease or increase in the interparticle spacing, respectively. Transmission electron microscopy images are in consonance with the evidence from the optical spectra.     

Study of structural,electromagnetic and dielectric properties of cadmium substituted Ni–Zn nanosized ferrites

Sol-gel auto-combustion method was adopted to prepare Cd²⁺ ions substituted Ni–Zn nanosized ferrites having a chemical formula Ni_0.5Zn_0.5-xCd_xFe₂O₄ (0.0 $\le x\le 0.4)$. Their structural, electromagnetic, and dielectric properties were investigated by using XRD, FE-SEM, EDS, FTIR, VSM, and IS. The XRD analysis revealed a single-phase cubic structure of all samples. The addition of cadmium increased the lattice constant and cell volume of Ni–Zn ferrite due to the difference in the ionic radii between Cadmium (0.97 ?Å) and Zinc (0.74 ?Å). FESEM images showed irregularly shaped grain sizes in the range of 40 to 73 ?nm with random orientations and some agglomeration. The FTIR analysis also confirmed the presence of spinal ferrite phase functional groups in all samples. The saturation magnetization decreased (from 89.51 to 71.32 emu/g) with increasing cadmium content. However, the remanent magnetization and coercivity parameters increased with an increase in cadmium content. The dc resistivity as a function of the temperature of all samples was investigated, and the activation energies were found to be in the range of 0.48 to 0.51 ?eV. The dielectric loss decreased with increasing cadmium content. However, the dielectric constant and dielectric loss tangent (tan) varied non-monotonically with increased cadmium content.