Microfluidic platform for combinatorial synthesis in picolitre droplets

This paper presents a droplet-based microfluidic platform for miniaturized combinatorial synthesis. As a proof of concept, a library of small molecules for early stage drug screening was produced. We present an efficient strategy for producing a 7 × 3 library of potential thrombin inhibitors that can be utilized for other combinatorial synthesis applications. Picolitre droplets containing the first type of reagent (reagents A(1), A(2), …, A(m)) were formed individually in identical microfluidic chips and then stored off chip with the aid of stabilizing surfactants. These droplets were then mixed to form a library of droplets containing reagents A(1-m), each individually compartmentalized, which was reinjected into a second microfluidic chip and combinatorially fused with picolitre droplets containing the second reagent (reagents B(1), B(2), …, B(n)) that were formed on chip. The concept was demonstrated with a three-component Ugi-type reaction involving an amine (reagents A(1-3)), an aldehyde (reagents B(1-7)), and an isocyanide (held constant), to synthesize a library of small molecules with potential thrombin inhibitory activity. Our technique produced 10(6) droplets of each reaction at a rate of 2.3 kHz. Each droplet had a reaction volume of 3.1 pL, at least six orders of magnitude lower than conventional techniques. The droplets can then be divided into aliquots for different downstream screening applications. In addition to medicinal chemistry applications, this combinatorial droplet-based approach holds great potential for other applications that involve sampling large areas of chemical parameter space with minimal reagent consumption; such an approach could be beneficial when optimizing reaction conditions or performing combinatorial reactions aimed at producing novel materials.     

Chemoselective reactions of amidines: selective formation of iminopyrimidine regioisomers

The dramatic effect of base on the chemoselectivity of the reaction of amidines with substituted 3-phenyl-2-propynylnitriles is demonstrated. Amidine 1 can be added to cyanoalkyne 2 to give iminopyrimidine isomer 3 with high selectivity. The addition of 2 equiv of NaHMDS completely reverses the selectivity of the reaction, yielding isomer 4 almost exclusively. This method has been used to prepare a variety of substituted 4-iminopyrimidines.     

Determination of stability constants for metal-ligand complexes using the voltammetric oxidation wave of the anion/ligand and the DeFord and Hume formalism

The voltammetric oxidation peaks for anions and other ligands that react at the Hg electrode can be used for the determination of stability constants of metal-ligand complexes using the DeFord and Hume formalism. Metal-ligand complexes with known stability constants that span the range of logbeta=2.9-5.9 were determined using the oxidation wave of the ligand as metal was varied. For the larger stability constants, it was possible to titrate concentrations of metal to ligand that are smaller than the ligand concentration and obtain reliable data (beta(j)C(x)(j) approaches 1 in this case) indicating that an excess of titrant is not required to obtain reliable beta values. Data reduction with different versions of the Solver tool (included with Microsoft Excel) is discussed and blind use of these programs without knowledge of the physical chemistry of the system is discouraged. The use of Solver gives beta values that are in agreement with previous work that used (non)linear regression to evaluate each F(n)(X) versus [X] function.     

Total synthesis of (-)-hennoxazole A

An enantioselective, convergent total synthesis of the antiviral marine natural product (-)-hennoxazole A is completed in 14 steps (longest linear sequence) from commercially available 4-methyloxazole-2-carboxylic acid. Synthesis of the C(1)-C(15) pyran/bisoxazole fragment takes advantage of an aldol-like coupling between a dimethyl acetal and an N-acetylthiazolidinethione for the direct, stereoselective installation of the C(8)-methoxy-bearing stereocenter. A one-pot acetoacetate acylation/decarboxylation/cyclodehydration of another elaborate thiazolidinethione allows for rapid assembly of the pyran-based ring system. Synthesis of the C(15)-C(25) skipped triene side chain fragment makes use of a [2,3]-Wittig-Still rearrangement for efficient installation of the trisubstituted Z-double bond. Key late-stage coupling of the two fragments is effected by deprotonation of the methyl group on the bisoxazole system using lithium diethylamide, followed by alkylation with an allylic bromide side chain segment to form the C(15)-C(16) bond.     

Total synthesis of (-)-hennoxazole A

An enantioselective, convergent, total synthesis of the antiviral marine natural product (-)-hennoxazole A has been completed in 17 steps, longest linear sequence, from serine methyl ester and in 9 steps from an achiral bisoxazole intermediate. Elaboration of a thiazolidinethione allowed for rapid assembly of the pyran-based ring system. Key late-stage coupling was effected by deprotonation of the bisoxazole methyl group, followed by alkylation with an allylic bromide side chain segment. [structure: see text]     

Microdroplets in Microfluidics: An Evolving Platform for Discoveries in Chemistry and Biology

Microdroplets in microfluidics offer a great number of opportunities in chemical and biological research. They provide a compartment in which species or reactions can be isolated, they are monodisperse and therefore suitable for quantitative studies, they offer the possibility to work with extremely small volumes, single cells, or single molecules, and are suitable for high‐throughput experiments. The aim of this Review is to show the importance of these features in enabling new experiments in biology and chemistry. The recent advances in device fabrication are highlighted as are the remaining technological challenges. Examples are presented to show how compartmentalization, monodispersity, single‐molecule sensitivity, and high throughput have been exploited in experiments that would have been extremely difficult outside the microfluidics platform.     

Fast atom bombardment mass spectrometry of alkali metal fluorides and chlorides; a comparison of the solid salt and glycerol matrix spectra

The Fast Atom Bombardment (FAB) mass spectra of the alkali metal chlorides (Na, K, Cs) and fluorides (Na, K, Rb, Cs) were obtained from solids and a glycerol matrix, using a fast atom bombardment source. From solids the fluorides exhibited an ion abundance enhancement of the well-known [M(MF)₄]⁺ cluster, which decreased with increasing cation size. A gradual decrease in the n=4 enhancement was observed as the salt was diluted with glycerol. In the chlorides only sodium chloride showed the n=4 relative enhancement. The mass spectra of the salts from a glycerol matrix at molar ratios of 1:1 to 1:10 showed that the spectra of the 1:1 solutions were similar to those from the solids, while glycerol adducts were found to increase with increasing glycerol concentration. A [M(MX)_n(gly)]⁺ species that featured successive losses of HX was observed. It has not been established whether HX losses take place in solution, in the surface/vacuum interface and/or whether gas phase reactions might be responsible for the observation of the [M(MX)_n(gly)–y HX]^? species in the mass spectra of the MX/glycerol system.     

Studies on the Diastereoselective Preparation of Bis-cyclopropanes

The identification of two natural products, FR-900848 and U-106305, has stimulated interest concerning the relationship between configurational isomerism, conformational isomerism, and biological activity of polycyclopropanes. Efforts to investigate the relationship between configurational and conformational isomerism through molecular modeling suggest that significantly different three-dimensional structures will result from unique primary structures. Any effort to address these issues demands that stereoselective methods for the preparation of polycyclopropanes be developed. We have investigated the application of zinc-carbenoid cyclopropanation in the presence of chiral dioxaboralanes to the preparation of eight stereochemically unique bicyclopropanes. The trans-vinylcyclopropane starting materials demonstrated very little substrate-induced stereoselectivity, while the cis-vinylcyclopropane demonstrates modest to excellent stereocontrol. A model for the substrate-based stereocontrol is proposed. We also used the spectroscopic data gathered in this investigation to probe the substrate-mediated stereocontrol in the rhodium(II)-catalyzed cyclopropanation of vinylcyclopropanes with ethyl diazoacetate.