Application of simulated standard spectra for the analysis of complex sample spectra from NaI(Tl) detectors

The most accurate method for the analysis of complex gamma ray spectra from scintillation detectors is least squares method. The major requirement of this method is individual standard spectra of all nuclides expected in the complex spectrum which is not possible and feasible for some nuclides. In the present work, an approach of using simulated standard spectrum of the radionuclides for the least squares analysis is studied. The paper describes the methodology used for the generation of simulated spectrum which is the main objective, and validation of results using standard sources in the Sodium Iodide (NaI(Tl)) based gamma ray spectrometer.     

Antisense oligonuclotides with oxetane-constrained cytidine enhance heteroduplex stability,and elicit satisfactory RNase H response as well as showing improved resistance to both exo and endonucleases

Antisense oligonucleotides (AONs) with single and double oxetane C modifications [1',2'-oxetane constrained cytidine, 1-(1',3'-O-anhydro-beta-D-psicofuranosyl)cytosine] have been evaluated, in comparison with the corresponding T-modified AONs, for their antisense potentials by targeting to a 15mer complementary RNA. Although the C modified mixmer AONs show approximately 3 degrees C drop per modification in melting temperature (Tm) of their hybrid AON-RNA duplexes, they are found to be good substrates for RNase H, in comparison with the native AON-RNA duplex. An AON with double C modifications along with 3'-DPPZ (dipyridophenazine) conjugation shows the Tm of the hybrid duplexes as high as that of the native, and the RNase H activity as good as its unconjugated counterpart. A detailed Michaelis-Menten kinetic analysis of RNase H cleavage showed that the single and double C modified AON-RNA duplexes as well as double C modifications along with 3'-DPPZ have catalytic activities (kcat) close to the native. However, the R Nase H binding affinity (1/Km) showed a slight decrease with increase in the number of modifications, which results in less effective enzyme activity (kcat/Km) for C modified AON-RNA duplexes. All oxetane modified AON-RNA hybrids showed a correlation of Tm with the 1/Km, Vmax, or Vmax/Km. The C modified AONs (with 3'-DPPZ), as in the T counterpart, showed an enhanced tolerance towards the endonuclease and exonuclease degradation compared to the native (the oxetane-sugar and the DPPZ based AONs are non-toxic to K562 cell growth, ref. 18). Thus a balance has been found between exo and endonuclease stability vis-a-vis thermostability of the heteroduplex and the R Nase H recruitment capability and cleavage with the oxetane-constrained cytidine incorporated AONs as potential antisense candidates with a fully phosphate backbone for further biological assessment.     

Comparison of radiometric and non-radiometric methods for uranium determination in groundwater of Punjab,India

Uranium in groundwater samples collected from Punjab state, India was determined using radiometric methods (extractive liquid scintillation and Cerenkov counting). Experimental conditions were optimized by studying the effect of sample pH, quenching and amount of extracting agent added to the scintillation cocktail on recovery of uranium. To ensure the accuracy of results, both radiometric methods were compared with non radiometric method such as adsorptive stripping voltammetry and found to be very good agreement. The distinct advantage of proposed radiometric methods is almost 100 % effective especially extractive liquid scintillation for simultaneous measurement of alpha and beta emitting radionuclides with fast and simple sample preparation.     

Gold nanoparticles functionalized with deep-cavity cavitands: synthesis, characterization, and photophysical studies

In this report, we present methods of functionalization of AuNP's with deep-cavity cavitands that can include organic molecules. Two types of deep-cavity cavitand-functionalized AuNP's have been synthesized and characterized, one soluble in organic solvents and the other in water. Functionalized AuNP soluble in organic solvents forms a 1:1 host-guest complex where the guest is exposed to the exterior solvents. The one soluble in water forms a 2:1 host-guest complex where the guest is protected from solvent water. Phosphorescence from thiones and benzil included within heterocapsules attached to AuNP was quenched by gold atoms present closer to the guests included within deep-cavity cavitands. During this investigation, we have synthesized four new deep-cavity cavitands. Of these, two thiol-functionalized hosts allowed us to make stable AuNP's. However, AuNP's protected with two amine-functionalized cavitands tended to aggregate within a day.     

Tactile Response Characterization of a Dynamic System Using Craig-Bampton Method

Vibrational characteristics in small horizontal axis wind turbine system are presented in this study with a system concept called tactile response and substructuring. The main focus is on managing the dynamic properties like vibration, noise, and harshness that occur during the operational mode. Tactile response is defined as the response of subsystem which is induced when a human body touches a vibrating system. Sub structuring is a computational method used to reduce the dynamic behavior of a large complex system with a smaller number of degrees of freedom without disturbing the mesh size of the model. Sub structuring has the ability to combine numerical results along with the experimental results. Combination of substructuring and tactile response is applied in this study. Mode shapes of the system are analyzed and results obtained are correlated within this study to provide better optimization of the results. Wind turbine excited with wind energy depends on wind speed. Torsional vibration has a significant role in determining dynamic properties. Torsional vibration is caused as a result of the rotation of the turbine blade and depends on wind speed. The study gives importance to investigating the ability to simulate the numerical method and tactile response to predict and improve dynamic properties.     

Synthesis of [Ru(phen)(2)dppz](2+)-tethered oligo-DNA and studies on the metallointercalation mode into the DNA duplex

To explore the binding properties of [Ru(phen)(2)dppz](2+) complex (phen = 1,10-phenanthroline, dppz = dipyrido[3,2-a:2',3'-c]phenazine) in a sequence-specific manner in DNA duplex, it was tethered through the dppz ligand to a central position as well as both at the 3'- and 5'-ends of oligodeoxyribonucleotide (ODN). The middle [Ru(phen)(2)dppz](2+)-ODN tethered was resolved and isolated as four pure diastereomers, while the 3'- or 5'-[Ru(phen)(2)dppz](2+)-ODNs were inseparable on RP-HPLC. Thermal stability of the (Ru(2+)-ODN).DNA duplexes is found to increase considerably (DeltaT(m) = 12.8-23.4 degrees C), depending upon the site of the covalent attachment of the tethered [Ru(phen)(2)dppz](2+) complex, or the chirality of the [Ru(phen)(2)dppz](2+)-linker tethered at the middle of the ODN, compared to the unlabeled counterpart. Gross differences in CD between the [Ru(phen)(2)dppz](2+)-tethered and the native DNA duplexes showed that the global duplex conformation of the former has considerably altered from the B-type, but is still recognized by DNase I. The thermal melting studies, CD measurements, as well as DNase I digestion data, are interpreted as a result of intercalation of the dppz moiety, which is realized by threading of the Ru(phen)(2) complex part through the DNA duplex core. DNase I footprinting with four diastereomerically pure middle ([Ru(phen)(2)dppz](2+)-ODN).DNA duplexes furthermore showed that the tethered [Ru(phen)(2)dppz](2+)-linker chirality dictates the stereochemical accessibility of various phosphodiester moieties (around the intercalation site) toward the cleavage reaction by the enzyme. The diastereomerically pure ruthenium-modified duplexes, with the well-defined pi-stack, will be useful to explore stereochemistry-dependent energy- and electron-transfer chemistry to understand oxidative damage to the DNA double helix as well as the long-range energy- and electron-transfer processes with DNA as a reactant.     

Studies on Mo doped vanadium oxide film by pulsed RF magnetron sputtering

Molybdenum doped vanadium oxide film on quartz and silicon substrates are grown by pulsed RF magnetron sputtering method. Surface morphology, phase analysis and oxide states are investigated by field emission scanning electron microscopy, X‐ray diffraction and X‐ray photoelectron spectroscopy techniques, respectively. Crystalline nature of the film deposited on both quartz and silicon are depicted. The transmittance and reflectance spectra recorded for the entire solar region. Further, optical constants viz. optical band gap and refractive index of the deposited films are estimated. Wavelength dependent low reflectance characteristic is observed for the deposited film on silicon. IR emittance (ε_IR) and sheet resistance (R_s) of the film are also evaluated. Copyright © 2017 John Wiley & Sons, Ltd.     

Site-selective depurination by a periodate-dependent deoxyribozyme

A deoxyribozyme is identified that mediates the site-selective depurination of its 5'-terminal guanosine nucleotide using periodate (IO(4)-) as an obligatory cofactor.