Computational Design of Novel Allosteric Inhibitors for Plasmodium falciparum DegP

The serine protease, DegP exhibits proteolytic and chaperone activities, essential for cellular protein quality control and normal cell development in eukaryotes. The P. falciparum DegP is essential for the parasite survival and required to combat the oscillating thermal stress conditions during the infection, protein quality checks and protein homeostasis in the extra-cytoplasmic compartments, thereby establishing it as a potential target for drug development against malaria. Previous studies have shown that diisopropyl fluorophosphate (DFP) and the peptide SPMFKGV inhibit E. coli DegP protease activity. To identify novel potential inhibitors specific to PfDegP allosteric and the catalytic binding sites, we performed a high throughput in silico screening using Malaria Box, Pathogen Box, Maybridge library, ChEMBL library and the library of FDA approved compounds. The screening helped identify five best binders that showed high affinity to PfDegP allosteric (T0873, T2823, T2801, {"type":"entrez-protein","attrs":{"text":"RJC02337","term_id":"1480409465","term_text":"RJC02337"}}RJC02337, CD00811) and the catalytic binding site (T0078L, T1524, T2328, BTB11534 and 552691). Further, molecular dynamics simulation analysis revealed {"type":"entrez-protein","attrs":{"text":"RJC02337","term_id":"1480409465","term_text":"RJC02337"}}RJC02337, BTB11534 as the best hits forming a stable complex. WaterMap and electrostatic complementarity were used to evaluate the novel bio-isosteric chemotypes of {"type":"entrez-protein","attrs":{"text":"RJC02337","term_id":"1480409465","term_text":"RJC02337"}}RJC02337, that led to the identification of 231 chemotypes that exhibited better binding affinity. Further analysis of the top 5 chemotypes, based on better binding affinity, revealed that the addition of electron donors like nitrogen and sulphur to the side chains of butanoate group are more favoured than the backbone of butanoate group. In a nutshell, the present study helps identify novel, potent and Plasmodium specific inhibitors, using high throughput in silico screening and bio-isosteric replacement, which may be experimentally validated.     

Counterion and solvent effects on the dilute solution viscosity of polystyrene ionomers

We present an analysis of data on the intrinsic viscosity [η] of sulfo-polystyrene ionomers in several solvents for a variety of sulfonation levels and counterions. For solvents of low dielectric constant, 2 < ε < 18, [η] decreases from the base polymer value [η]₀ with increasing substitution level. This behavior was attributed to intramolecular association of ionic dipoles. The ratio [η]/[η]₀ was found to depend on a single reduced variable α_Aα_Sx, where x is the fractional substitution, α_A depends only on the counterion, and α_S ∝ ε^?1 depends only on the solvent. For solvents of high dielectric constant, 36 < ε < 47, [η] increases approximately as x³, and counterion effects are small. This behavior was attributed to ionic dissociation, giving rise to a polyelectrolyte effect. Implications of the low ε results are discussed in relation to association-induced gelation behavior and possible generalizations of the reduced variables approach.     

4-t-Butylphenoxo complexes of oxovanadium(V)

Summary Complexes of composition [VOCl₂(OC₆H₄Bu-t-4)] (1) and [VOCl(OC₆H₄Bu-t-4)₂] (2) have been synthesized by the reaction of VOCl₃ with equimolar and bimolar amounts, respectively, of 4-t-BuC₆H₄OSiMe₃ in CCl₄ and characterized by physio-chemical techniques. The complexes react with -hydroxyaldehydes and ketones such as 2-hydroxybenzaldehyde (salicylaldehyde, salH), and 2-hydroxy-2-phenylacetophenone (benzoin, benzH), 2-hydroxyacetophenone (hapH) and also with the potassium salt of p-chlorobenzohydroxamic acid (KBHACl) in 11 and 12 molar ratios, to yield five- and six-coordinate complexes.     

Influence of preferential solvation on the interpolymer complex formation between methacrylic acid–methacrylamide copolymer and poly(vinyl pyrrolidone)

Interpolymer complex formation has been studied between methacrylic acid–methacrylamide copolymer and poly(vinyl pyrrolidone) in acetone–water mixtures of different compositions. At a specific composition of the solvent (e.g., 70% water + 30% acetone by volume), the intrinsic viscosity of the copolymer and the reduced viscosity of 1:1 interpolymer complex had minimum values. Preferential solvation coefficients (λ/C) have been calculated for the various compositions of the solvent mixtures. An excellent coincidence could be obtained between the maximum (λ/C) and the minimum in the viscosity of the polymer solutions. Interpretations have been sought in terms of conformational change of the copolymer at the specific composition of the solvent mixture.     

Solution properties of poly p-isopropyl α-methylstyrene

Two series (S and F) of poly p-isopropyl α-methylstyrene were characterized by viscometry, light scattering (LS), osmometry and gel permeation chromatography (GPC). S-samples were prepared by bulk anionic polymerization whereas F-samples were obtained on fractionation by preparative GPC of a polymer also prepared in bulk but with a different initiator. The K parameter in the Mark-Houwink relation was 5.55 × 10^?4 for series-S and 4.50 × 10^?4 for series-F, whereas the exponent a was 0.55 for both series. The Mark-Houwink equations for series-S and -F hold good at 25 and 30° for both toluene and tetrahydrofuran as solvents and have been corrected for polydispersity. The chain dimensions obtained with LS were much higher than those computed from the viscosity data indicating that the hydrodynamic theories in their present state should not be used for the calculation of chain dimensions. The deviations from the GPC universal calibration curve of polystyrene observed with some samples were attributed to structural differences among the polymers and to their high polydispersity.     

Intradiffusion coefficients in perchloric acid solutions: Water at 5°C; water and perchlorate ion at 25°C

Intradiffusion coefficients for tritiated water (³HHO) and perchlorate ion (³⁶ClO ₄ ^- ) were measured in perchloric acid solutions. At 5°C the diffusion coefficient measured for the tritiated species increases to a maximum near 1.3 mol-dm^–3. The data at 25°C have been used to calculate distinct diffusion coefficients, D _ij ^d . As a precursor for those calculations, new estimates were made of the Onsager phenomenological coefficients, l _ij . The l _ij and D _ij ^d are similar to the respective coefficients in hydrochloric acid solutions.     

Synthesis and characterization of palladium(II) complexes of some tellurium heterocycles

Summary A series of square planar complexes of the type [PdX₂L₂] where X=Cl, Br, I; L=telluracyclopentane (tcp), telluracyclohexane (tch) or benzotelluracyclopentane (btp) have been synthesised. The complexes were characterised by far-i.r., n.m.r. and u.v.-vis. spectroscopy. The data implytrans-geometries except for the complex [PdCl₂(tch)₂] where a mixture ofcis- andtrans-isomers is obtained.     

Equilibrium anionic polymerization of α-methylstyrene in p-dioxane

The equilibrium anionic polymerization of α-methylstyrene in p-dioxane, with potassium as initiator, has been investigated at 5, 15, 25, and 40°C by using high-vacuum techniques. The comparison of these results with those obtained previously for the equilibrium polymerization of α-methylstyrene in tetrahydrofuran revealed that, although the values of ΔG_1c, the free-energy change upon the polymerization of 1 mole of liquid monomer to 1 bases-mole of liquid amorphous polymer of infinite chain length, are the same for both systems, there is a distinct effect of the solvent. This effect is reflected in the value of monomer equilibrium concentration and its variation with polymer concentration and is explained in terms of a solvent–monomer and solvent–polymer interaction parameter.