Dynamics of kinks in biological membranes

kinks created in a biological membrane by the interaction with a movable bead. We arrive at the evolution equations for both the bead and the membrane, whence we conclude that the force exerted on the bead by a fixed membrane points in the direction along which the curvature of the membrane is more concentrated. This is the first step towards understanding the basic mechanism behind the dynamics of protein aggregation which takes place on biological membranes. Received November 6, 2001 / Published online February 4, 2002     

Finite dimensional representations of the quantum analog of the enveloping algebra of a complex simple Lie algebra

Let be a complex simple Lie algebra. We show that whent is not a root of 1 all finite dimensional representations of the quantum analogU _t are completely reducible, and we classify the irreducible ones in terms of highest weights. In particular, they can be seen as deformations of the representations of the (classical)U .     

Toward efficient Zn(II)-based artificial nucleases

A series of cis-cis-triaminocyclohexane Zn(II) complex-anthraquinone intercalator conjugates, designed in such a way to allow their easy synthesis and modification, have been investigated as hydrolytic cleaving agents for plasmid DNA. The ligand structure comprises a triaminocyclohexane platform linked by means of alkyl spacers of different length (from C(4) to C(8)) to the anthraquinone group which may intercalate the DNA. At a concentration of 5 microM, the complex of the derivative with a C(8) alkyl spacer induces the hydrolytic stand scission of supercoiled DNA with a rate of 4.6 x 10(-6) s(-1) at pH 7 and 37 degrees C. The conjugation of the metal complex with the anthraquinone group leads to a 15-fold increase of the cleavage efficiency when compared with the anthraquinone lacking Zn-triaminocyclohexane complex. The straightforward synthetic procedure employed, allowing a systematic change of the spacer length, made possible to gain more insight on the role of the intercalating group in determining the reactivity of the systems. Comparison of the reactivity of the different complexes shows a remarkable increase of the DNA cleaving efficiency with the length of the spacer. In the case of too-short spacers, the advantages due to the increased DNA affinity are canceled due to the incorrect positioning of the reactive group, thus leading to cleavage inhibition.     

Chaos in classical cosmology (II)

We present a new dynamical calculation about the Friedman-Robertson-Walker universe considered as an autonomous Hamiltonian. The time evolution of this Hamiltonian presents numerical instabilities so we apply a symplectic integration via infinitesimal canonical transformations of the phase space time evolution that preserves the Poincaré invariant. In this way, we have also obtained a sensitive improvement in the accuracy of the Hamiltonian constraint, as well as in the computing time. We confirm our previous results; in a spatially closed universe, the route to chaos is reached by sucessive breakage of the resonant tori due to the action of 11 resonances.     

Charge transfer in FeO: a combined molecular-dynamics and ab initio study

Molecular-dynamics simulations and ab initio electronic structure calculations were carried out to determine the rate of charge transfer in stoichiometric wustite (FeO). The charge transfer of interest occurs by II/III valence interchange between nearest-neighbor Fe atoms, with the Fe(III) constituting a "hole" electronic defect. There are two possible nearest-neighbor charge transfers in the FeO lattice, which occur between edge-sharing or corner-sharing FeO(6) octahedra. Molecular-dynamics simulations predict charge-transfer rates of 3.7 x 10(11) and 1.9 x 10(9) s(-1) for the edge and corner transfers, respectively, in good agreement with those calculated using an ab initio cluster approach (1.6 x 10(11) and 8.0 x 10(8) s(-1), respectively). The calculated rates are also similar to those along the basal and c-axis directions in hematite (alpha-Fe(2)O(3)) determined previously. Therefore, as is the case for hematite, wustite is predicted to show anisotropic electrical conductivity. Our findings indicate that a rigid-ion model does not give acceptable results, thus showing the need to account for the change in polarizability of the system upon charge transfer. Our model achieves this by using a simple mechanical shell model. By calculating the electronic coupling matrix elements for many transition state configurations obtained from the molecular-dynamics simulations, we found evidence that the position of the bridging oxygen atoms can greatly affect the amount of electronic coupling between the donor and acceptor states. Finally, we address the effect of oxygen vacancies on the charge transfer. It was found that an oxygen vacancy not only creates a driving force for holes to transport away from the vacancy (or equivalently for electrons to diffuse toward the vacancy) but also lowers the free-energy barriers for charge transfer. In addition, the reorganization energy significantly differed from the nondefective case in a small radius around the defect.     

A new algorithm to evaluate bielectronic integrals with 1s Slater‐type orbitals obtained by the integral transforms

This article presents a variation of the integral transform method to evaluate multicenter bielectronic integrals (12|34), with 1s Slater‐type orbitals. It is proved that it is possible to define, out of the expression of (12|34) given by the integral transform method, a function F(q) that has the property of having a unique Q, such that F(Q) = (12|34). Therefore, F(q) may be used to calculate (12|34). It is shown that the evaluation of F(Q) turns out to be simpler than the three‐dimensional integral involved in the calculation of (12|34), and an algorithm is presented to calculate Q. The results show that relative errors on the order of 10^?3 or lower are obtained very efficiently. In addition, it is shown that the proposed algorithm is very stable. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

Molecular dynamics investigation of ferrous-ferric electron transfer in a hydrolyzing aqueous solution: calculation of the pH dependence of the diabatic transfer barrier and the potential of mean force

We present a molecular model for ferrous-ferric electron transfer in an aqueous solution that accounts for electronic polarizability and exhibits spontaneous cation hydrolysis. An extended Lagrangian technique is introduced for carrying out calculations of electron-transfer barriers in polarizable systems. The model predicts that the diabatic barrier to electron transfer increases with increasing pH, due to stabilization of the Fe3+ by fluctuations in the number of hydroxide ions in its first coordination sphere, in much the same way as the barrier would increase with increasing dielectric constant in the Marcus theory. We have also calculated the effect of pH on the potential of mean force between two hydrolyzing ions in aqueous solution. As expected, increasing pH reduces the potential of mean force between the ferrous and ferric ions in the model system. The magnitudes of the predicted increase in diabatic transfer barrier and the predicted decrease in the potential of mean force nearly cancel each other at the canonical transfer distance of 0.55 nm. Even though hydrolysis is allowed in our calculations, the distribution of reorganization energies has only one maximum and is Gaussian to an excellent approximation, giving a harmonic free energy surface in the reorganization energy F(DeltaE) with a single minimum. There is thus a surprising amount of overlap in electron-transfer reorganization energies for Fe(2+)-Fe(H2O)6(3+), Fe(2+)-Fe(OH)(H2O)5(2+), and Fe(2+)-Fe(OH)2(H2O)+ couples, indicating that fluctuations in hydrolysis state can be viewed on a continuum with other solvent contributions to the reorganization energy. There appears to be little justification for thinking of the transfer rate as arising from the contributions of different hydrolysis states. Electronic structure calculations indicate that Fe(H2O)6(2+)-Fe(OH)n(H2O)(6-n)(3-n)+ complexes interacting through H3O2- bridges do not have large electronic couplings.     

Synthesis of Nickel Supported Catalysts for Hydrogen Production by Sol-Gel Method

SiO₂ and Al₂O₃ supported Ni catalysts were synthesized in the form of xerogels: the SiO₂ based materials were prepared starting from Ni propionate or glycolate salts and reacting them with tetraethoxysilane (TEOS) in propionic acid, Si(ethylene glycolate) or sodium silicate. The Al₂O₃ supported catalysts were prepared similarly from Ni propionate salts with Al iso-propoxide salts. Narrow metal particles and strong metal support interactions are observed in the sol-gel catalysts. The metal dispersion was higher for Al₂O₃ based materials than the SiO₂ ones and it deeply depends on the Ni precursor for the silica supported Ni. Wet impregnated oxides with similar Ni loading have higher metal surface area than those from sol-gel processing. The influence of surface differences on the catalytic activity of the materials was studied following the CH₄ and CO₂ reaction in dry reforming conditions by pulse reaction tests.     

Chromium(III) Hydroxide Solubility in the Aqueous K+-H+-OH?-CO2-HCO 3? -CO 32? -H2O System: A?Thermodynamic Model

Chromium(III)-carbonate reactions are expected to be important in managing high-level radioactive wastes. Extensive studies on the solubility of amorphous Cr(III) hydroxide solid in a wide range of pH (3–13) at two different fixed partial pressures of CO₂(g) (0.003 or 0.03 atm.), and as functions of K₂CO₃ concentrations (0.01 to 5.8 mol⋅kg⁻¹) in the presence of 0.01 mol⋅dm⁻³ KOH and KHCO₃ concentrations (0.001 to 0.826 mol⋅kg⁻¹) at room temperature (22±2 °C) were carried out to obtain reliable thermodynamic data for important Cr(III)-carbonate reactions. A combination of techniques (XRD, XANES, EXAFS, UV-Vis-NIR spectroscopy, thermodynamic analyses of solubility data, and quantum mechanical calculations) was used to characterize the solid and aqueous species. The Pitzer ion-interaction approach was used to interpret the solubility data. Only two aqueous species [Cr(OH)(CO₃)₂²⁻ and Cr(OH)₄CO₃³⁻] are required to explain Cr(III)-carbonate reactions in a wide range of pH, CO₂(g) partial pressures, and bicarbonate and carbonate concentrations. Calculations based on density functional theory support the existence of these species. The log ₁₀ K° values of reactions involving these species [{Cr(OH)₃(am) + 2CO₂(g)⇌Cr(OH)(CO₃)₂²⁻+2H⁺} and {Cr(OH)₃(am) + OH⁻+CO₃²⁻ ⇌Cr(OH)₄CO₃³⁻}] were found to be −(19.07±0.41) and −(4.19±0.19), respectively. No other data on any Cr(III)-carbonato complexes are available for comparisons.     

Holo- and hemidirected lead(II) in the polymeric [Pb(4)(mu-3,4-TDTA)2(H2O)2]*4H2O complex. N,N,N',N'-tetraacetate ligands derived from o-phenylenediamines as sequestering agents for lead(II)

The coordinating ability of the ligands 3,4-toluenediamine-N,N,N',N'-tetraacetate (3,4-TDTA), o-phenylenediamine-N,N,N',N'-tetraacetate (o-PhDTA), and 4-chloro-1,2-phenylenediamine-N,N,N',N'-tetraacetate (4-Cl-o-PhDTA) (H4L acids) toward lead(II) is studied by potentiometry (25 degrees C, I = 0.5 mol x dm(-3) in NaClO4), UV-vis spectrophotometry, and 207Pb NMR spectrometry. The stability constants of the complex species formed were determined. X-ray diffraction structural analysis of the complex [Pb4(mu-3,4-TDTA)4(H2O)2]*4H2O (1) revealed that 1 has a 2-D structure. The layers are built up by the polymerization of centrosymmetric [Pb4L2(H2O)2] tetranuclear units. The neutral layers have the aromatic rings of the ligands pointing to the periphery, whereas the metallic ions are located in the central part of the layers. In compound 1, two types of six-coordinate lead(II) environments are produced. The Pb(1) is coordinated to two nitrogen atoms and four carboxylate oxygens from the ligand, whereas Pb(2) has an O6 trigonally distorted octahedral surrounding. The lead(II) ion is surrounded by five carboxylate oxygens and a water molecule. The carboxylate oxygens belong to four different ligands that are also joined to four other Pb(1) ions. The selective uptake of lead(II) was analyzed by means of chemical speciation diagrams as well as the so-called conditional or effective formation constants K(Pb)eff. The results indicate that, in competition with other ligands that are strong complexing agents for lead(II), our ligands are better sequestering agents in acidic media.