Patents and literature

Protein engineering and site-directed mutagenesis is becoming immensely important in both fundamental studies and commercial applications involving proteins and enzymes in biocatalysis. Protein engineering has become a powerful tool to help biochemists and molecular enzymologists elucidate structure-function relationships in enzymic active sites, to understand the intricacies of protein folding and denaturation, and to alter the selectivity of enzymatic catalysis. Commercial applications of engineered enzymes are being developed to increase protein stability, widen or narrow substrate specificity, and to develop novel approaches for use of enzymes in organic synthesis, drug design, and clinical applications. In addition to protein engineering, novel expression systems have been designed to prepare large quantities of genetically engineered proteins. Recent US patents and scientific literature on protein engineering, site-directed mutagenesis, and protein expression systems related to protein engineering are surveyed. Patent abstracts are summarized individually and a list of literature references are given.     

Analyse de couches minces de verres chalcogenures par diffusion elastique de protons et mesure de gammas prompts

Résumé Une méthode d'étude de la composition stoéchiométrique de couches minces (10 à 500 μg/cm²) de verres chalcogénures est développée. L'étude des réactions nucléaire; induites par bombardement de protons de basse énergie (<4 MeV) sur les éléments constitutifs Ge, As, Te et S, conduit à choisir la diffusion élastique et la détection de gammas prompts pour le dosage simulatené. La précision et la sensibilité de la méthode sont discutées à partir des résultats obtenus. L'utilisation de la résonance fine sur le soufre (p, p'γ) est appliquée à l'étude de l'homogénéité des cibles.     

Determination of trimethylsilyl methylated nucleic acid bases in urine by gas-liquid chromatography.

A method for the determination of the urinary excretion level of methylated nucleic acid bases by gas-liquid chromatography (GLC) has been developed. A clean-up procedure prior to GLC analysis consisted of hydrolysis, filtration, charcoal adsorption, and anion exchange. Studies to determine optimum derivatization conditions for conversion of the methylated bases to their trimethylsilyl derivatives and to evaluate GLC parameters and columns to obtain the best separation were conducted. Application of the method was shown by determining the excretion levels of methylated bases in urine of normal controls and of patients with various types of malignancy.     

Preclinical evaluation of a novel water-soluble chlorin E6 derivative (BLC 1010) as photosensitizer for the closure of the neovessels

In the present study, photodynamic activity of a novel photosensitizer (PS), Chlorin e(6)-2.5 N-methyl-d-glucamine (BLC 1010), was evaluated using the chorioallantoic membrane (CAM) as an in vivo model. After intravenous (i.v.) injection of BLC 1010 into the CAM vasculature, the applicability of this drug for photodynamic therapy (PDT) was assessed in terms of fluorescence pharmacokinetics, i.e. leakage from the CAM vessels, and photothrombic activity. The influence of different PDT parameters including drug and light doses on the photodynamic activity of BLC 1010 has been investigated. It was found that, irrespective of drug dose, an identical continuous decrease in fluorescence contrast between the drug inside and outside the blood vessels was observed. The optimal treatment conditions leading to desired vascular damage were obtained by varying drug and light doses. Indeed, observable damage was achieved when irradiation was performed at light doses up to 5 J/cm(2) 1 min after i.v. injection of drug doses up to 0.5 mg/kg body weight(b.w.). However, when irradiation with light doses of more than 10 J/cm(2) was performed 1 min after injection of drug doses up to 2 mg/kg body weight, this led to occlusion of large blood vessels. It has been demonstrated that it is possible to obtain the desired vascular occlusion and stasis with BLC 1010 for different combinations of drug and/or light doses.     

High-performance liquid chromatographic analysis of biogenic amines in biological materials as o-phthalaldehyde derivatives.

A remarkably sensitive, simple and selective reversed-phase high-performance liquid chromatographic (HPLC) method has been developed, allowing, for the first time, the direct measurement of histamine, norepinephrine, octopamine, normetanephrine, dopamine, serotonin and tyramine in a single sample of plasma (2 ml), tissue (0.2 g), or urine. The biogenic amines were modified by pre-column derivatization with o-phthalaldehyde which stabilizes the molecules, aids in extraction, and improves HPLC detection at the nanogram level. To minimize losses during the sampling procedure a careful collection procedure was designed. We developed a simple sample cleanup in which the samples were thawed, neutralized with KOH, immediately derivatized, extracted into ethyl acetate (EtOAc) and then chromatographed by HPLC. The derivatives were stable in EtOAc for more then 24 h. Interfering amino acids were removed from the EtOAc by partitioning twice with Na2HPO4 buffer (pH 10.0). Complete separation was achieved in ca. 60--90 min on a muBondapak phenyl column using a stepwise gradient of acetonitrile and/or methanol-phosphate buffer (pH 5.1). A variable wavelength fluorometer with a 5-microliter flow-cell was used (excitation 340 nm; emission 480 nm). Linearity ranged from 200 pg to 50 ng onto the column. Precision (R.S.D.) for retention times was 1% and for derivatization and injection 2.5%. Recoveries of the seven biogenic amines from plasma spiked with 25 ng/ml averaged 70%, with a relative standard deviation of 6%. Separation studies were also done using a muBondapak C18 column. The effects of various eluents are presented. Gas-liquid chromatography was also investigated but lacked the sensitivity achieved by HPLC. The HPLC method is used routinely for the determination of biogenic amines in plasma from pigs with malignant hyperthemia and thermally stressed bovine. Significant differences in levels of biogenic amines were noted between stressed and non-stressed animals. Data on rat brain tissue samples were compared with the trihydroxyindole method and canine heart tissue was analyzed for ventricular norepinephrine and dopamine. Application of the method to urine from normal persons and a patient with a brain tumor has been demonstrated.     

Reinvestigation of the Conformation of Cyclosporin A in Chloroform

New investigations of cyclosporin A in CDCl₃ have been performed to obtain additional and more accurate distance restraints than utilized in our previous studies of cyclosporin A. Build-up rates at 600 MHz using 6 different mixing times at low temperatures (252.5 K) were determined and transformed into distances using the two-spin approximation. With the new distance restraints in the MD simulations using the GROMOS package, we can unambiguously conclude the presence of a βII′-turn. The new structure resembles the X-ray structure more than the structure previously determined, especially regarding the orientation of the MeBmt side chain. In the new structure and in the solid state, the side chain is folded over the backbone (although there are substantial differences in the χ₁ torsion), in contrast to the old structure, where the side chain is extended away from the backbone.     

Apparent molar volumes,heat capacities,and molecular excluded volumes of methylated,hydroxy and methoxy derivatives of 1-methylcytosine in aqueous solutions at 25°C

Densities and specific heat capacities of aqueous solutions: 1-methylcytosine; 1-methyl-N⁴-hydroxycytosine; 1,5-dimethylcytosine; I,N⁴-dimethylcytosine; 1,5-dimethyl-N⁴-hydroxycytosine; 1-methyl-N⁴-methoxycytosine; 1,N⁴,N⁴-trimethylcytosine, 1,5-dimethyl-N⁴-methoxycytosine were determined using flow calorimetry and flow densimetry at 25°C. Apparent molar volumes and heat capacities were then determined. Molecular excluded volumes were evaluated. A relationship was found between the values of the increments in partial molar values and the kind of groups substituted. Four types of contributions were distinguished: substitution of hydrogen on C, N, and O (in OH group on N4) atoms by CH₃ group and replacement of hydrogen on N4 atom by OH group. The correlation between the experimental partial molar volumes and calculated molecular excluded volumes was also elaborated.     

Phase transitions and band structure in metallic perovskites (carbides and nitrides)

Properties of Mn₃XN and Mn₃XC types of compounds are analyzed on the basis of a model for the electronic band structure, which consists of a large conduction band overlapping a narrow band that results from the strong hybridization between the p orbitals of the metalloid and some of the d orbitals of the manganese. The crystal field at the sites of manganese is assumed to be strong. The structure of the narrow band is calculated in the tight-binding model. The Fermi energy lies very close to a sharp singularity in the density of states. In the cubic and Pauli paramagnetic phase, such a singularity has a sixfold degeneracy. The magnetic and structural instabilities, which appear when the temperature is decreased, are explained by the removal of that degeneracy by a shear strain and the formation of small magnetic moments. The phase transitions can be studied in detail by expanding the variation of the free energy with respect to the shear strains and the magnetic moments. The coefficients of the expansion are calculated as functions of the temperature. The variation of the volume is explained by the existence of coupling terms to the shear strain and to the magnetic moments.     

Microporous, fast response cellulose ether hydrogel prepared by freeze-drying

A simple and effective method of preparing fast-response gels is developed. The freeze-drying and subsequent rehydration of thermosensitive gels alters the microstructural properties of the gels in a way that leads to rapid shrinking rates. Microporous hydroxypropyl cellulose (HPC) gels were created by this method to investigate the influence of the process on the swelling and shrinking kinetics of the gels in response to temperature changes. Micropores of different size ranges were produced by freezing gels with different amounts of water at −20 °C. Water content was the key factor to control the microporosity and the shrinking rates of gels. After the freezing treatment, an effective diffusion coefficient for shrinking could be determined by fitting Fick's law to the data (5.2 × 10⁻⁴ cm²/s). This was an increase of two orders of magnitude over that of the untreated, non-porous gel (6.0 × 10⁻⁶ cm²/s). The magnitude of the shrinking coefficient indicates that the shrinking rate of the microporous gel is probably limited by the convective flow, as unsteady flow through porous media follows the same differential equation as Fick's law, but with much greater transport coefficients, as observed here. Physically, the shrinking rate may be determined by the level of interconnected-cells in a microporous structure present at the beginning of shrinking process because the convection through the interconnected-cells is estimated to be much slower than the polymer network diffusion rate of the struts of micropores (0.1–3.0 μm) as well as heat transfer.