Are "pinholes" the cause of excess current in superconducting tunnel junctions? A study of Andreev current in highly resistive junctions

In highly resistive superconducting tunnel junctions, excess subgap current is usually observed and is often attributed to microscopic pinholes in the tunnel barrier. We have studied the subgap current in superconductor-insulator-superconductor (SIS) and superconductor-insulator-normal-metal (SIN) junctions. In Al/AlO(x)/Al junctions, we observed a decrease of 2 orders of magnitude in the current upon the transition from the SIS to the SIN regime, where it then matched theory. In Al/AlO(x)/Cu junctions, we also observed generic features of coherent diffusive Andreev transport in a junction with a homogenous barrier. We use the quasiclassical Keldysh-Green function theory to quantify single- and two-particle tunneling and find good agreement with experiment over 2 orders of magnitude in transparency. We argue that our observations rule out pinholes as the origin of the excess current.     

Mean-field pairing theory for the charge-stripe phase of high-temperature cuprate superconductors

Striped high-T(c) superconductors such as La(2-y-x)Nd(y)Sr(x)CuO(4) and La(2-x)Ba(x)CuO(4) near x = 1/8 show a fascinating competition between spin and charge order and superconductivity. A theory for these systems therefore has to capture both the spin correlations of an antiferromagnet and the pair correlations of a superconductor. For this purpose we present here an effective Hartree-Fock theory incorporating both electron pairing with finite center-of-mass momentum and antiferromagnetism. We show that this theory reproduces the key experimental features such as the formation of the antiferromagnetic stripe patterns at 7/8 band filling or the quasi-one-dimensional electronic structure observed by photoemission spectroscopy.     

Fermionic atoms in a three dimensional optical lattice: observing Fermi surfaces, dynamics, and interactions

We have studied interacting and noninteracting quantum degenerate Fermi gases in a three-dimensional optical lattice. We directly image the Fermi surface of the atoms in the lattice by turning off the optical lattice adiabatically. Because of the confining potential, gradual filling of the lattice transforms the system from a normal state into a band insulator. The dynamics of the transition from a band insulator to a normal state is studied, and the time scale is measured to be an order of magnitude larger than the tunneling time in the lattice. Using a Feshbach resonance, we increase the interaction between atoms in two different spin states and dynamically induce a coupling between the lowest energy bands. We observe a shift of this coupling with respect to the Feshbach resonance in free space which is anticipated for strongly confined atoms.     

Non-projectability of polytope skeleta

We investigate necessary conditions for the existence of projections of polytopes that preserve full k-skeleta. More precisely, given the combinatorics of a polytope and the dimension e of the target space, what are obstructions to the existence of a geometric realization of a polytope with the given combinatorial type such that a linear projection to e-space strictly preserves the k-skeleton. Building on the work of Sanyal (2009), we develop a general framework to calculate obstructions to the existence of such realizations using topological combinatorics. Our obstructions take the form of graph colorings and linear integer programs. We focus on polytopes of product type and calculate the obstructions for products of polygons, products of simplices, and wedge products of polytopes. Our results show the limitations of constructions for the deformed products of polygons of Sanyal and Ziegler (2010) and the wedge product surfaces of Rörig and Ziegler (2011) and complement their results.     

A variational approach to the construction and Malliavin differentiability of strong solutions of SDE’s

In this article we develop a new approach to construct solutions of stochastic equations with merely measurable drift coefficients. We aim at demonstrating the principles of our technique by analyzing strong solutions of stochastic differential equations driven by Brownian motion. An important and rather surprising consequence of our method which is based on Malliavin calculus is that the solutions derived by Veretennikov (Theory Probab Appl 24:354–366, 1979) for Brownian motion with bounded and measurable drift in $\mathbb{R }^{d}$ are Malliavin differentiable. Further, a strength of our approach, which does not rely on a pathwise uniqueness argument, is that it can be transferred and applied to the analysis of various other types of (stochastic) equations: We obtain a Bismut–Elworthy–Li formula (Elworthy and Li, J Funct Anal 125:252–286, 1994) for spatial derivatives of solutions to the Kolmogorov equation with bounded and measurable drift coefficients. To derive the formula, we use that our approach can be applied to obtain Sobolev differentiability in the initial condition in addition to Malliavin differentiability of the associated stochastic differential equations. Another application of our technique is the construction of unique solutions of the stochastic transport equation with irregular vector fields. Moreover, our approach is also applicable to the construction of solutions of stochastic evolution equations on Hilbert spaces.     

Synthesis,Biochemical Characterization,and Genetic Encoding of a 1,2,4-Triazole Amino Acid as an Acetyllysine Mimic for Bromodomains of the BET Family

Lysine acetylation is a charge-neutralizing post-translational modification of proteins bound by bromodomains (Brds). A 1,2,4-triazole amino acid (ApmTri) was established as acetyllysine (Kac) mimic recruiting Brds of the BET family in contrast to glutamine commonly used for simulating this modification. Optimization of triazole substituents and side chain spacing allowed BET Brd recruitment to ApmTri-containing peptides with affinities similar to native substrates. Crystal structures of ApmTri-containing peptides in complex with two BET Brds revealed the binding mode which mirrored that of Kac ligands. ApmTri was genetically encoded and recombinant ApmTri-containing proteins co-enriched BRD3(2) from cellular lysates. This interaction was blocked by BET inhibitor JQ1. With genetically encoded ApmTri, biochemistry is now provided with a stable Kac mimic reflecting charge neutralization and Brd recruitment, allowing new investigations into BET proteins in vitro and in vivo.     

Optimizing Antimicrobial Peptide Dendrimers in Chemical Space

We used nearest‐neighbor searches in chemical space to improve the activity of the antimicrobial peptide dendrimer (AMPD) G3KL and identified dendrimer T7 , which has an expanded activity range against Gram‐negative pathogenic bacteria including Klebsiellae pneumoniae, increased serum stability, and promising activity in an in vivo infection model against a multidrug‐resistant strain of Acinetobacter baumannii. Imaging, spectroscopic studies, and a structural model from molecular dynamics simulations suggest that T7 acts through membrane disruption. These experiments provide the first example of using virtual screening in the field of dendrimers and show that dendrimer size does not limit the activity of AMPDs.