Urinary Metabolomics Study of Patients with Bicuspid Aortic Valve Disease

Bicuspid aortic valve (BAV) is the most common congenital heart defect responsible for valvular and aortic complications in affected patients. Causes and mechanisms of this pathology are still elusive and thus the lack of early detection biomarkers leads to challenges in its diagnosis and prevention of associated cardiovascular anomalies. The aim of this study was to explore the potential use of urine Nuclear Magnetic Resonance (NMR) metabolomics to evaluate a molecular fingerprint of BAV. Both multivariate and univariate statistical analyses were performed to compare the urinary metabolome of 20 patients with BAV with that of 24 matched controls. Orthogonal partial least squared discriminant analysis (OPLS-DA) showed statistically significant discrimination between cases and controls, suggesting seven metabolites (3-hydroxybutyrate, alanine, betaine, creatine, glycine, hippurate, and taurine) as potential biomarkers. Among these, glycine, hippurate and taurine individually displayed medium sensitivity and specificity by receiver operating characteristic (ROC) analysis. Pathway analysis indicated two metabolic pathways likely perturbed in BAV subjects. Possible contributions of gut microbiota activity and energy imbalance are also discussed. These results constitute encouraging preliminary findings in favor of the use of urine-based metabolomics for early diagnosis of BAV.     

Intermolecular interactions in organofluorine aggregates probed by laser R2PI spectroscopy

Resonant Two Photon Ionization (R2PI) spectroscopy has been applied to the study of host–guest interactions in molecular clusters formed by supersonic exspansion. Here, the results of R2PI spectroscopy of the fluorinated organic molecules para and ortho-fluoro-sec-butylbenzene and their complexes with water and argon are reported and discussed. In particular, it is shown that the position of the fluorine atom on the aromatic ring influences the formation of different kind of complexes (σ versus π) with argon and water. Ab initio calculations were performed to get insight into the molecular shape and the structure of these clusters.     

Modelling neurotransmitter functions: a laser spectroscopic study of (1S,2S)-N-methyl pseudoephedrine and its complexes with achiral and chiral molecules

Wavelength and mass resolved resonance-enhanced two photon ionization (R2PI) excitation spectra of (1S,2S)-N-methyl pseudoephedrine (MPE) and its complexes with several achiral and chiral solvent molecules, including water (W), methyl (R)-lactate (L(R)), methyl (S)-lactate (L(S)), (R)-2-butanol (B(R)), and (S)-2-butanol (B(S)), have been recorded after a supersonic molecular beam expansion and examined in the light of ab initio calculations. The spectral patterns of the selected complexes have been interpreted in terms of the specific hydrogen-bond interactions operating in the diastereomeric complexes, whose nature in turn depends on the structure and the configuration of the solvent molecule. The obtained results confirm the view that a representative neurotransmitter molecule, like MPE, "communicates" with the enantiomers of a chiral substrate through different, specific interactions. These findings can be regarded as a further contribution to modelling neurotransmitter functions in biological systems.     

Competitive binding exchange between alkali metal ions (K+, Rb+, and Cs+) and Na+ ions bound to the dimeric quadruplex [d(G4T4G4)]2: a 23Na and 1H NMR study

A comparative study of the competitive cation exchange between the alkali metal ions K⁺, Rb⁺, and Cs⁺ and the Na⁺ ions bound to the dimeric quadruplex [d(G₄T₄G₄)]₂ was performed in aqueous solution by a combined use of the ²³Na and ¹H NMR spectroscopy. The titration data confirm the different binding affinities of these ions for the G‐quadruplex and, in particular, major differences in the behavior of Cs⁺ as compared to the other ions were found. Accordingly, Cs⁺ competes with Na⁺ only for the binding sites at the quadruplex surface (primarily phosphate groups), while K⁺ and Rb⁺ are also able to replace sodium ions located inside the quadruplex. Furthermore, the ¹H NMR results relative to the CsCl titration evidence a close approach of Cs⁺ ions to the phosphate groups in the narrow groove of [d(G₄T₄G₄)]₂. Based on a three‐site exchange model, the ²³Na NMR relaxation data lead to an estimate of the relative binding affinity of Cs⁺ versus Na⁺ for the quadruplex surface of 0.5 at 298 K. Comparing this value to those reported in the literature for the surface of the G‐quadruplex formed by 5′‐guanosinemonophosphate and for the surface of double‐helical DNA suggests that topology factors may have an important influence on the cation affinity for the phosphate groups on DNA. Copyright © 2009 John Wiley & Sons, Ltd.     

Electron impact ionization of thymine clusters embedded in superfluid helium droplets

Embedding molecules in helium clusters has become a powerful technique for the preparation of cold targets for spectroscopy experiments, as well as for the assembly of complex, fragile molecular species. We have recently developed a helium cluster source and a pick-up cell to produce neutral beams of doped helium droplets, to be used as targets in studies on electron collisions with molecules of biological relevance. In the present work we present the results of a series of experiments on electron-impact ionization of helium clusters doped with thymine and 1-methylthymine, where several interesting phenomena were observed, i.e., (i) electron impact ionization of molecular clusters inside the helium droplets leads predominantly to protonated clusters; (ii) the appearance energies are close to the ionization threshold of the helium atom but ionization efficiency curves in addition extend down by several eV; (iii) ionized molecular clusters can undergo metastable decay via the loss of one neutral monomer.     

Recognition of biological systems by mass-resolved laser spectroscopy

Molecular clusters are non-covalent aggregates widely recognized as a new state of matter, whose properties are neither those of the individual constituents nor those of their condensed phases. Tailor made molecular clusters have proved to be ideal systems for modelling molecular recognition phenomena and their applications in many scientific fields interlocking the physical and life sciences are now well assessed. In the last few years, it has become possible, through the use of advanced laser techniques, to study the interactions between individual components of a cluster, produced by laser desorption. The studies were carried out developing laser spectroscopic methodologies, capable of characterizing molecular clusters and probing the chemical bond breaking and forming on an extremely short time scale.This paper deals with chiral recognition in gas phase clusters of biological interest through the application of the mass-resolved Resonant Two Photon Ionization (1 and 2 color R2PI) laser technique.The measurement of the spectroscopic shifts and of the fragmentation thresholds of diasteromeric clusters allows the determination of the nature of the interactions which control the formation of biological material and affect their stability and reactivity.     

Monosolvation of R-1-phenyl-2,2,2-trifluoroethanol with amines: configurational effects on the excitation, ionization, and fragmentation of diastereomeric complexes

Wavelength and mass selected resonant two-photon ionization spectra of molecular clusters between R-1-phenyl-2,2,2-trifluoroethanol (FER) and methylamine (M) or the enantiomers of 2-aminobutane (AR and AS) were recorded after supersonic molecular beam expansion and analyzed with the aid of ab initio molecular orbital calculations. The experimental results agree with theoretical calculations pointing to the predominance of the two most stable conformers of monosolvated FER whose CF3 group establishes intense NH...F interactions with the selected amines so as to orient them away from the aromatic ring. This reduces the enantioselectivity of FER toward the 2-aminobutane enantiomers as compared to that exhibited by the R-1-phenylethanol (ER) analogue, where obviously NH...F interactions are absent.     

Fluorescent Indolo[3,2-a]phenazines against Toxoplasma gondii: Concise Synthesis by Gold-Catalyzed Cycloisomerization with 1,2-Silyl Migration and ipso-Iodination Suzuki Sequence

A gold-catalyzed cycloisomerization of 2-indolyl-3-[(trimethylsilyl)ethynyl)]quinoxalines with concomitant 1,2-silyl shift forms 6-(trimethylsilyl)indolo[3,2-a]phenazines in moderate to excellent yield. These silylated heterocycles are readily transformed into 6-aryl-indolo[3,2-a]phenazines in moderate to good yield by one-pot ipso-iodination Suzuki coupling. The title compounds represent a novel type of tunable luminophore. Structure-property relationships for 6-aryl-indolo[3,2-a]phenazines obtained from Hammett correlations with σ_p+ substituent parameters indicate that emission maxima, Stokes shifts, and fluorescence quantum yields can be fine-tuned by the remote para-aryl substituent. Furthermore, indolo[3,2-a]phenazines were found to exhibit interesting activities against medically relevant pathogens such as the Apicomplexa parasite Toxoplasma gondii with an IC₅₀ of up to 0.67±0.13 μM. Thus, these compounds are promising candidates for novel anti-parasitic therapies.