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Fedorov O Huber K Eisenreich A Filippakopoulos P King O Bullock AN Szklarczyk D Jensen LJ Fabbro D Trappe J Rauch U Bracher F Knapp S 《Chemistry & biology》2011,18(1):67-76
There is a growing recognition of the importance of protein kinases in the control of alternative splicing. To define the underlying regulatory mechanisms, highly selective inhibitors are needed. Here, we report the discovery and characterization of the dichloroindolyl enaminonitrile KH-CB19, a potent and highly specific inhibitor of the CDC2-like kinase isoforms 1 and 4 (CLK1/CLK4). Cocrystal structures of KH-CB19 with CLK1 and CLK3 revealed a non-ATP mimetic binding mode, conformational changes in helix αC and the phosphate binding loop and halogen bonding to the kinase hinge region. KH-CB19 effectively suppressed phosphorylation of SR (serine/arginine) proteins in cells, consistent with its expected mechanism of action. Chemical inhibition of CLK1/CLK4 generated a unique pattern of splicing factor dephosphorylation and had at low nM concentration a profound effect on splicing of the two tissue factor isoforms flTF (full-length TF) and asHTF (alternatively spliced human TF). 相似文献
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We give conditions that ensure the preservation of finite products by left Kan extensions into cocomplete subcanonical sites. The conditions involve a suitable notion of flatness (interpreted in the internal logic of the site) of the functor that is extended and a good behavior of colimits used in the calculation of the left Kan extension. When the recipient category is a Grothendieck topos the good behavior of the colimits is granted and the flatness conditions turn out to be necessary as well as sufficient. We also show that the category of compactly generated Hausdorff spaces and that of small categories are equipped with suitable topologies that account for the well-known phenomenon of preservation of finite products by the geometric and categorical realization, respectively, of simplicial sets. 相似文献
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A Series of Potent CREBBP Bromodomain Ligands Reveals an Induced‐Fit Pocket Stabilized by a Cation–π Interaction 下载免费PDF全文
Timothy P. C. Rooney Dr. Panagis Filippakopoulos Dr. Oleg Fedorov Dr. Sarah Picaud Wilian A. Cortopassi Duncan A. Hay Dr. Sarah Martin Dr. Anthony Tumber Dr. Catherine M. Rogers Dr. Martin Philpott Dr. Minghua Wang Dr. Amber L. Thompson Dr. Tom D. Heightman Dr. David C. Pryde Dr. Andrew Cook Prof. Dr. Robert S. Paton Dr. Susanne Müller Prof. Dr. Stefan Knapp Dr. Paul E. Brennan Prof. Dr. Stuart J. Conway 《Angewandte Chemie (International ed. in English)》2014,53(24):6126-6130
The benzoxazinone and dihydroquinoxalinone fragments were employed as novel acetyl lysine mimics in the development of CREBBP bromodomain ligands. While the benzoxazinone series showed low affinity for the CREBBP bromodomain, expansion of the dihydroquinoxalinone series resulted in the first potent inhibitors of a bromodomain outside the BET family. Structural and computational studies reveal that an internal hydrogen bond stabilizes the protein‐bound conformation of the dihydroquinoxalinone series. The side chain of this series binds in an induced‐fit pocket forming a cation–π interaction with R1173 of CREBBP. The most potent compound inhibits binding of CREBBP to chromatin in U2OS cells. 相似文献
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Miduturu CV Deng X Kwiatkowski N Yang W Brault L Filippakopoulos P Chung E Yang Q Schwaller J Knapp S King RW Lee JD Herrgard S Zarrinkar P Gray NS 《Chemistry & biology》2011,18(7):868-879
Selective protein kinase inhibitors have only been developed against a small number of kinase targets. Here we demonstrate that "high-throughput kinase profiling" is an efficient method for the discovery of lead compounds for established as well as unexplored kinase targets. We screened a library of 118 compounds constituting two distinct scaffolds (furan-thiazolidinediones and pyrimido-diazepines) against a panel of 353 kinases. A distinct kinase selectivity profile was observed for each scaffold. Selective inhibitors were identified with submicromolar cellular activity against PIM1, ERK5, ACK1, MPS1, PLK1-3, and Aurora A,B kinases. In addition, we identified potent inhibitors for so far unexplored kinases such as DRAK1, HIPK2, and DCAMKL1 that await further evaluation. This inhibitor-centric approach permits comprehensive assessment of a scaffold of interest and represents an efficient and general strategy for identifying new selective kinase inhibitors. 相似文献
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Hellwig S Miduturu CV Kanda S Zhang J Filippakopoulos P Salah E Deng X Choi HG Zhou W Hur W Knapp S Gray NS Smithgall TE 《Chemistry & biology》2012,19(4):529-540
Highlights? Eight chemotypes block c-Fes kinase activity in vitro and in cell-based assays ? Potent inhibition of c-Fes by the anaplastic lymphoma kinase inhibitor TAE684 ? Solution of a c-Fes SH2-kinase crystal structure in complex with TAE684 ? Inhibitors reveal a role for c-Fes in osteoclast differentiation from macrophages 相似文献
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Maksimoska J Williams DS Atilla-Gokcumen GE Smalley KS Carroll PJ Webster RD Filippakopoulos P Knapp S Herlyn M Meggers E 《Chemistry (Weinheim an der Bergstrasse, Germany)》2008,14(16):4816-4822
In this study, we probe and verify the concept of designing unreactive bioactive metal complexes, in which the metal possesses a purely structural function, by investigating the consequences of replacing ruthenium in a bioactive half-sandwich kinase inhibitor scaffold by its heavier congener osmium. The two isostructural complexes are compared with respect to their anticancer properties in 1205 Lu melanoma cells, activation of the Wnt signaling pathway, IC(50) values against the protein kinases GSK-3beta and Pim-1, and binding modes to the protein kinase Pim-1 by protein crystallography. It was found that the two congeners display almost indistinguishable biological activities, which can be explained by their nearly identical three-dimensional structures and their identical mode of action as protein kinase inhibitors. This is a unique example in which the replacement of a metal in an anticancer scaffold by its heavier homologue does not alter its biological activity. 相似文献
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Storm Hassell-Hart Sarah Picaud Raphael Lengacher Joshua Csucker Regis Millet Gilles Gasser Roger Alberto Hannah Maple Robert Felix Zbigniew J. Leśnikowski Helen J. S. Stewart Timothy J. Chevassut Simon Morley Panagis Filippakopoulos John Spencer 《Helvetica chimica acta》2021,104(3):e2000214
A series of bulky organometallic and organic analogues of the bromodomain (BRD) inhibitor (+)-JQ1 have been prepared. The most potent, N-[(adamantan-1-yl)methyl]-2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetraazatricyclo[8.3.0.02,6]trideca-2(6),4,7,10,12-pentaen-9-yl]acetamide, 2e , showed excellent potency with an KD=ca. 130 nm vs. BRD4(1) and a ca. 2-fold selectivity over BRD4(2) (KD=ca. 260 nm ). Its binding to the first bromodomain of BRD4 was determined by a protein cocrystal structure. 相似文献
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Feng L Geisselbrecht Y Blanck S Wilbuer A Atilla-Gokcumen GE Filippakopoulos P Kräling K Celik MA Harms K Maksimoska J Marmorstein R Frenking G Knapp S Essen LO Meggers E 《Journal of the American Chemical Society》2011,133(15):5976-5986
The generation of synthetic compounds with exclusive target specificity is an extraordinary challenge of molecular recognition and demands novel design strategies, in particular for large and homologous protein families such as protein kinases with more than 500 members. Simple organic molecules often do not reach the necessary sophistication to fulfill this task. Here, we present six carefully tailored, stable metal-containing compounds in which unique and defined molecular geometries with natural-product-like structural complexity are constructed around octahedral ruthenium(II) or iridium(III) metal centers. Each of the six reported metal compounds displays high selectivity for an individual protein kinase, namely GSK3α, PAK1, PIM1, DAPK1, MLCK, and FLT4. Although being conventional ATP-competitive inhibitors, the combination of the unusual globular shape and rigidity characteristics, of these compounds facilitates the design of highly selective protein kinase inhibitors. Unique structural features of the octahedral coordination geometry allow novel interactions with the glycine-rich loop, which contribute significantly to binding potencies and selectivities. The sensitive correlation between metal coordination sphere and inhibition properties suggests that in this design, the metal is located at a "hot spot" within the ATP binding pocket, not too close to the hinge region where globular space is unavailable, and at the same time not too far out toward the solvent where the octahedral coordination sphere would not have a significant impact on potency and selectivity. This study thus demonstrates that inert (stable) octahedral metal complexes are sophisticated structural scaffolds for the design of highly selective chemical probes. 相似文献
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