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排序方式: 共有268条查询结果,搜索用时 15 毫秒
1.
Edgardo Becerra Giovanny Aguilera-Durn Laura Berumen Antonio Romo-Mancillas Guadalupe García-Alcocer 《Molecules (Basel, Switzerland)》2021,26(4)
Multidrug resistance protein-4 (MRP4) belongs to the ABC transporter superfamily and promotes the transport of xenobiotics including drugs. A non-synonymous single nucleotide polymorphisms (nsSNPs) in the ABCC4 gene can promote changes in the structure and function of MRP4. In this work, the interaction of certain endogen substrates, drug substrates, and inhibitors with wild type-MRP4 (WT-MRP4) and its variants G187W and Y556C were studied to determine differences in the intermolecular interactions and affinity related to SNPs using protein threading modeling, molecular docking, all-atom, coarse grained, and umbrella sampling molecular dynamics simulations (AA-MDS and CG-MDS, respectively). The results showed that the three MRP4 structures had significantly different conformations at given sites, leading to differences in the docking scores (DS) and binding sites of three different groups of molecules. Folic acid (FA) had the highest variation in DS on G187W concerning WT-MRP4. WT-MRP4, G187W, Y556C, and FA had different conformations through 25 ns AA-MD. Umbrella sampling simulations indicated that the Y556C-FA complex was the most stable one with or without ATP. In Y556C, the cyclic adenosine monophosphate (cAMP) and ceefourin-1 binding sites are located out of the entrance of the inner cavity, which suggests that both cAMP and ceefourin-1 may not be transported. The binding site for cAMP and ceefourin-1 is quite similar and the affinity (binding energy) of ceefourin-1 to WT-MRP4, G187W, and Y556C is greater than the affinity of cAMP, which may suggest that ceefourin-1 works as a competitive inhibitor. In conclusion, the nsSNPs G187W and Y556C lead to changes in protein conformation, which modifies the ligand binding site, DS, and binding energy. 相似文献
2.
Current and logarithm-current distributions on a three-dimensional random-bond percolation cubic network were studied at the percolation threshold by computer simulations. Predictions of a hierarchical model that combine fractal structure and randomness agree with our numerical simulations. In the thermodynamic limit the logarithm-current distribution exhibits ann(ln(i))i
1/3 dependence below some characteristic currenti
c. This distribution may scale with lni/lnL, but the data are insufficient to make this a definite conclusion. Due to the small range of lnL considered, a study of the moments does not reveal this behavior and a study of the distribution itself is required. 相似文献
3.
The 1,3-dipolar cycloadditions of C-glycosyl nitrile oxides and acetylenes to an alkyne and an azide, respectively, bearing a masked glycinyl moiety furnished disubstituted isoxazoles and triazoles. Unveiling the glycinyl group in these cycloadducts afforded C-glycosyl alpha-amino acids in which the two bioactive entities were tethered through rigid five-membered heterocycles. Optimized entries to the same compounds involved the use of unmasked but protected alkyne- and azide-containing amino acids as the partners of 1,3-dipolar cycloadditions. 相似文献
4.
Edgardo Laborde John S. Kiely Lawrence E. Lesheski Mel C. Schroeder 《Journal of heterocyclic chemistry》1991,28(1):191-198
A convergent synthesis of 1,8-naphthyridine antibacterials bearing a carbon-carbon bonded, acyclic or cyclic vinyl substituent at the C-7 position has been achieved. The synthetic methodology is based upon the palladium-catalyzed cross coupling of a 7-chloro-1,8-naphthyridine with an appropriately substituted organotin reagent. 相似文献
5.
A method to identify the invariant subsets of bi-infinite configurations of cellular automata that propagate rigidly with a constant velocity nu is described. Causal traveling configurations, propagating at speeds not greater than the automaton range, mid R:numid R:=r, are considered. The sets of traveling configurations are presented by finite automata and its topological entropy is calculated. When the invariant subset of traveling configurations has nonzero topological entropy, the dynamics is dominated by the interaction of domains, composed of traveling patterns of finite size. The sets of traveling patterns and domains are presented by finite automata. End-resolving CA are shown to always have sets of traveling configurations that are spatially periodic with zero entropy, except possibly for traveling configurations at top speed. The elementary CA are examined exhaustively along these lines. (c) 1996 American Institute of Physics. 相似文献
6.
7.
P. Espeau B. Nicolaï R. Céolin M. -A. Perrin L. Zaske J. Giovannini F. Leveiller 《Journal of Thermal Analysis and Calorimetry》2007,90(2):341-342
Investigation into the thermal behavior of orthorhombic Forms I and II of spironolactone, by means of differential scanning
calorimetry and high-resolution X-ray powder diffraction, showed that Form I melts then recrystallizes into Form II at 373–393
K, i.e. in the temperature range within which high resolution X-ray powder diffration showed that Form I transforms into Form II.
Refinements of the lattice parameters of the two forms indicated that Form I is denser than Form II in the range from 298
K up to the temperature at which it melts. 相似文献
8.
Leibold C Alvarez RM Cutin EH Della Vedova CO Oberhammer H 《Inorganic chemistry》2003,42(13):4071-4075
The IR (gas) and Raman (liquid) spectra of FC(O)NSCl(2) demonstrate the presence of a conformational mixture in both phases. According to a gas electron diffraction study, the main conformer (94(8)%) possesses a syn-syn structure (C(O)F group synperiplanar with respect to the SCl(2) bisector and the C=O bond synperiplanar to the N=S bond). Quantum chemical calculations (HF, B3LYP and MP2 with 6-31G basis set, and MP2/6-311(2df)) predict a syn-anti structure for the second conformer. Analysis of the IR (gas) spectrum results in a contribution of 5(1)% of the minor form, corresponding to a Gibbs free energy difference DeltaG degrees = G degrees (syn-anti) - G degrees (syn-syn) = 1.75(15) kcal/mol. This value is reproduced very well by quantum chemical calculations, which include electron correlation effects (DeltaG degrees = 1.28-1.56 kcal/mol). The HF approximation overestimates this energy difference (DeltaG degrees = 3.24 kcal/mol). 相似文献
9.
Jessica Walkenhorst Umberto De Giovannini Alberto Castro Angel Rubio 《The European Physical Journal B - Condensed Matter and Complex Systems》2016,89(5):128
Recent advances in laser technology allow us to follow electronic motion at its natural time-scale with ultra-fast time resolution, leading the way towards attosecond physics experiments of extreme precision. In this work, we assess the use of tailored pumps in order to enhance (or reduce) some given features of the probe absorption (for example, absorption in the visible range of otherwise transparent samples). This type of manipulation of the system response could be helpful for its full characterization, since it would allow us to visualize transitions that are dark when using unshaped pulses. In order to investigate these possibilities, we perform first a theoretical analysis of the non-equilibrium response function in this context, aided by one simple numerical model of the hydrogen atom. Then, we proceed to investigate the feasibility of using time-dependent density-functional theory as a means to implement, theoretically, this absorption-optimization idea, for more complex atoms or molecules. We conclude that the proposed idea could in principle be brought to the laboratory: tailored pump pulses can excite systems into light-absorbing states. However, we also highlight the severe numerical and theoretical difficulties posed by the problem: large-scale non-equilibrium quantum dynamics are cumbersome, even with TDDFT, and the shortcomings of state-of-the-art TDDFT functionals may still be serious for these out-of-equilibrium situations. 相似文献
10.