DETECTION OF DNA-PSORALEN PHOTOADDUCTS in situ

Abstract— An immunological method, with the use of specific immune serum, has been developed for detection of 8-methoxypsoralen (8-MOP) photoadducts to DNA, formed in situ in cell nuclei, after combined treatment with 8MOP and UV-A irradiation (Zarçbska et al. , 1978). Lymphocytes fixed on slides or in suspension, and cryostat sections of different mammalian tissues, served as antigenic substrate, after treatment with 8-MOP and UV-A in vitro. Specific fluorescence in these substrates was detected in the nuclei after treatment with 30 ˜ 140 kJ/m² UV-A in the presence of 0.1-0.3 μg/cm² 8-MOP. PHA-stimulated-lymphocytes appeared to be the most sensitive substrate.
However, hairless mice treated with high doses of UV-A in vivo , 70 ˜ 360 kJ/m² did not reveal a specific fluorescence of epidermal nuclei, unless a high local concentration of 8-MOP was attained.
The apparent discrepancy in the level of photoadduct detection between the in vitro and in vivo treated specimens was explained by the low number of DNA-8-MOP-photoadducts formed in vivo under these experimental conditions. The relevance of these findings to the role of DNA-8-MOP-photoadducts formed during PUVA photochemotherapy is discussed.     

Mass spectra of complexes of 8-quinolinol with trivalent metals (AL,Ga, In,Sc, Cr and Fe)

The main fragmentation of the compounds MX_3-nox_n (oxH=8-quinolinol. n = 3; M=AL, Ga, In, Sc, Cr or Fe. n = 2; M=In or Fe; X=Cl or Br. InIox₂. n = 1; M=AL, In or Fe; X= Cl or Br) involves loss of X and intact ox_. radicals. The comparative abundances of the fragments are primarily related to the common oxidation states of the metals. For example, all the Mox₃ compounds show the ions [Mox₃]⁺ and [Mox₂]⁺. The ions [Mox]⁺ and [M]⁺ are present when M=Ga, In, Cr or Fe but for the elements with only one oxidation state (Al or Sc) [M]⁺ is absent and [Mox]⁺ has only very low abundance. When M= Cr or Fe metal-containing ions arising from loss of species such as CO, H₂O, HX, C₂H₂, H and OH by fragmentation of the ox ligand are also present; this behaviour is rationalised in terms of the ability of these metals to undergo a unit change in oxidation state. When n=1 the ions [MXox₂]⁺ and [Mox₂]⁺ and when n= 2 the ions [MX₂ox]⁺ and [Mox₃]⁺ are present; these ions arise by ionization and fragmentation of species formed by redistribution reactions in the mass spectrometer.     

Synthesis and Reactivity of the New Chiral Silylphosphite Esters {(+)-O,O-Dimethyl-L-tartrate}POSiR3 (R3 = Ph3, tBuMe2, Et3)

The new, chiral silylphosphite compounds (O,O-dimethyl-L-tartrato)POSiR₃, (R₃ = Ph₃, ^tBuMe₂, Et₃) have been synthesised and their activity as asymmetric phosphonylating reagents investigated.     

A second generation human haplotype map of over 3.1 million SNPs

We describe the Phase II HapMap, which characterizes over 3.1 million human single nucleotide polymorphisms (SNPs) genotyped in 270 individuals from four geographically diverse populations and includes 25-35% of common SNP variation in the populations surveyed. The map is estimated to capture untyped common variation with an average maximum r2 of between 0.9 and 0.96 depending on population. We demonstrate that the current generation of commercial genome-wide genotyping products captures common Phase II SNPs with an average maximum r2 of up to 0.8 in African and up to 0.95 in non-African populations, and that potential gains in power in association studies can be obtained through imputation. These data also reveal novel aspects of the structure of linkage disequilibrium. We show that 10-30% of pairs of individuals within a population share at least one region of extended genetic identity arising from recent ancestry and that up to 1% of all common variants are untaggable, primarily because they lie within recombination hotspots. We show that recombination rates vary systematically around genes and between genes of different function. Finally, we demonstrate increased differentiation at non-synonymous, compared to synonymous, SNPs, resulting from systematic differences in the strength or efficacy of natural selection between populations.     

Genome-wide detection and characterization of positive selection in human populations

With the advent of dense maps of human genetic variation, it is now possible to detect positive natural selection across the human genome. Here we report an analysis of over 3 million polymorphisms from the International HapMap Project Phase 2 (HapMap2). We used 'long-range haplotype' methods, which were developed to identify alleles segregating in a population that have undergone recent selection, and we also developed new methods that are based on cross-population comparisons to discover alleles that have swept to near-fixation within a population. The analysis reveals more than 300 strong candidate regions. Focusing on the strongest 22 regions, we develop a heuristic for scrutinizing these regions to identify candidate targets of selection. In a complementary analysis, we identify 26 non-synonymous, coding, single nucleotide polymorphisms showing regional evidence of positive selection. Examination of these candidates highlights three cases in which two genes in a common biological process have apparently undergone positive selection in the same population:LARGE and DMD, both related to infection by the Lassa virus, in West Africa;SLC24A5 and SLC45A2, both involved in skin pigmentation, in Europe; and EDAR and EDA2R, both involved in development of hair follicles, in Asia.     

Die Methoden zur direkten Messung des osmotischen Drucks

Ohne Zusammenfassung     

Sperm whale three-dimensional track, swim orientation, beam pattern, and click levels observed on bottom-mounted hydrophones

In an earlier paper [Nosal and Frazer Appl. Acoust. 61, 1187-1201 (2006)], a sperm whale was tracked in three-dimensions using direct and surface-reflected time differences (DRTD) of clicks recorded on five bottom-mounted hydrophones, a passive method that is robust to timing errors between hydrophones. This paper refines the DRTD method and combines it with a time of (direct) arrival method to improve the accuracy of the track. The position and origin time of each click having been estimated, pitch and yaw are then obtained by assuming the main axis of the whale is tangent to the track. Roll is then found by applying the bent horn model of sperm whale phonation, in which each click is composed of two pulses, p0 and p1, that exit the whale at different points. With instantaneous pitch, roll, and yaw estimated from time differences, amplitudes are then used to estimate the beam patterns of the p0 and p1 pulses. The resulting beam patterns independently confirm those obtained by Zimmer et al. [J. Acoust. Soc. Am. 117, 1473-1485 (2005); 118, 3337-3345 (2005)] with a very different experimental setup. A method for estimating relative click levels is presented and used to find that click levels decrease toward the end of a click series, prior to the "creak" associated with prey capture.     

Characterization of the flow dynamics of an enzyme reaction system

The characterization of the flow dynamics of an automated enzyme reaction system is discussed. Parametric and non-parametric characterizations are constructed and then tested against actual experiments. The analytical model provides a more compact representation than the numerical model. A second-order lag-plus-dead-time model gives a good fit to the experimental data.     

Extraction of nonstationarity information from correlation noise

A gas chromatograph is used as a model of a monitored process stream, and a method is developed to detect fixed-amplitude changes either in component concentration or system response to a perturbation. The multiple injection input and its advantages are based on the principles of correlation chromatography. The deconvolution of the aperiodic input pattern from the output results in a signal peak representing average system response and correlation “noise” which, when calibrated, gives the direction and magnitude of the change which has occurred. Because of the signal-averaging effect of the multiple inputs and deconvolution process, the effects of random fluctuations and noise are reduced.