Reduction of Entrained Hydroxy Species in Ormosil Films for Integrated Optics

Organically modified silicates (ormosils) have been viewed as possible materials for optical signal processing devices for communications networks. One significant problem obstructing their use in this application is the absorption of infrared light by hydroxy species (present for example in silanol groups (SiOH) and water) around the communications wavelengths (1310 and 1550 nm). We have investigated several ormosil compositions, synthesised via an aqueous sol-gel method, to determine if residual hydroxy groups can be removed more effectively via reducing the connectivity of the material by increasing the number of organic groups (such as Si—CH₃). Furthermore, we have investigated the effect of different inert atmospheres on the drying process. It was found that reducing the connectivity does promote the removal of hydroxy absorption, mainly via the condensation of residual silanol groups, but also by removal of residual water, depending on the other precursors in the system. It was also found that the drying atmosphere used (nitrogen or helium) had no effect on the drying process.     

Engineering cytochrome P-450s

Cytochrome P-450 isozymes represent a critical component of nature’s spectrum of detoxification catalysts that could be exploited for bioremediation. The ethanol-inducible human cytochrome P-450 2E1 serves as a model eukaryotic P-450 that complements the bacterial P-450 cam in dehalogenation and detoxification of environmental pollutants. We explored the construction of novel chimeric P-450s using cytochrome P-450 camC and 2E1 genes. For construction of chimera 1 (478 amino acids, 55.14 kDa), 145 amino acids from the N-terminus of P-450 2E1 protein (493 amino acids, 56.84 kDa) were replaced with 130 amino acids from the N-terminus of P-450 camC protein (415 amino acids, 46.66 kDa). In chimera 2 (525 amino acids, 60.24 kDa) the strategy involves replacement of 28 amino acids in the C-terminus of chimera 1 with 75 amino acids from the C-terminus of P-450 camC gene. Homology models of both the chimeric proteins were developed using SWISS-MODEL based on the known crystal structure of cytochrome P-450 camC, BM-3, 1DT6A, and 2C17A. The models indicated that the proposed heme-binding site was intact, which is inevitable for catalytic activity of cytochrome P-450s. The expression of chimera 1 and 2 genes in Escherichia coli DH5α was evident from light-pink cell pellets, protein band in sodium dodecyl sulfate polyacrylamide gel electrophoresis, and diagnostic carbon monoxide-difference spectra. Our studies show that strategies can be developed to exploit the natural diversity of the P-450 superfamily to generate chimeric biocatalysts that would provide new templates amenable to directed evolution.     

Erratum

A technique is reported for measuring triplet spin-lattice relaxation times in fluid solution. It is based on the observation of chemically induced electron spin polarization, in the presence of a triplet quencher. Spin-lattice relaxation times of the order of 10 ns are reported for the duroquinone triplet in various solvents.     

Biaxial bulge testing of polymeric sheets

The through thickness total strains of hydrostatically bulged domes of materials are usually determined indirectly. The in-plane circumferential strains are readily measured, and then constancy of volume is invoked to determine the “missing” or unknown strain. Some of our recent work with polymers has shown that volume constancy in large-scale deformation does not hold so that the usual computations of stress and strain during bulging of sheet may be in error. We describe an electrical device that reduces such errors by directly measuring the through thickness (and, thus, the thickness “strain”) for nonmetallic materials.     

Visualization of Babble–Speech Interactions Using Andrews Curves

Visualizing multidimensional data such as the mel frequency cepstral coefficients (MFCCs) proves difficult, especially when the number of dimensions is greater than 3. As a result, it becomes extremely difficult to spot trends in high-dimensional signal interactions. Andrews curves seam to aid in the process of performing graphical analysis of high-dimensional data. This study examines the properties of the babble in the feature domain as well as the effect of the babble noise on the MFCCs of clean speech. Experiments have been conducted using two babble models: the overlapping conversation model and the overlapping speaker model. The purpose of this paper was to provide an insight into the effect of the babble noise on the first thirteen MFCCs of clean speech through the use of Andrews curves. The investigations of this paper give a visual comparison of the signals to expose trends, which the conventional visualization methods do not. The use of Andrews curves not only allows the signal to be observed, but also allows for a statistical comparisons between signals. With a better understanding of the difference between the models, it would be possible to develop systems, which are more robust in babble-corrupted environment.     

Magnetic field effects on chemiluminescent fluid solutions

The effect of a magnetic field on the intensity of fluorescence from chemiluminescent reactions occurring in fluid solutions is calculated. The calculation first considers pairs of triplet molecules rotating in each other's vicinity and calculates the effect of a magnetic field on the rate at which the overall singlet state is populated. The field diminishes this rate, as in the solid-state situation. The triplets are then allowed to diffuse apart, and the process of populating the overall singlet state of the pair is treated as a relaxation process occurring during the diffusive trajectory. In this case too at high fields the intensity diminishes. The calculations are repeated for triplet-doublet quenching, and, in accord with the solid-state results, the intensity is enhanced at high fields because the quenching rate for doublet-triplet collisions is diminished, and the resultant fluorescence arises via triplets which escape abortive D-T encounters. Explicit expressions involving the dynamical parameters of the fluid (e.g. the translational and rotational correlation times of the species in the solutions) are given for the fluorescence intensity.     

Simultaneous registration and activation detection for fMRI

Registration using the least-squares cost function is sensitive to the intensity fluctuations caused by the blood oxygen level dependent (BOLD) signal in functional MRI (fMRI) experiments, resulting in stimulus-correlated motion errors. These errors are severe enough to cause false-positive clusters in the activation maps of datasets acquired from 3T scanners. This paper presents a new approach to resolving the coupling between registration and activation. Instead of treating the two problems as individual steps in a sequence, they are combined into a single least-squares problem and are solved simultaneously. Robustness tests on a variety of simulated three-dimensional EPI datasets show that the stimulus-correlated motion errors are removed, resulting in a substantial decrease in false-positive and false-negative activation rates. The new method is also shown to decorrelate the motion estimates from the stimulus by testing it on different in vivo fMRI datasets acquired from two different 3T scanners.