On the effect of covalently appended quinolones on termini of DNA duplexes

Quinolones are gyrase inhibitors that are widely used as antibiotics in the clinic. When covalently attached to oligonucleotides as 5'-acylamido substituents, quinolones were found to stabilize duplexes of oligonucleotides against thermal denaturation. For short duplexes, such as qu-T*GCGCA, where qu is a quinolone residue and T is a 5'-amino-5'-deoxythymidine residue, an increase in the UV melting point of up to 27.8 degrees C was measured. The stabilizing effect was demonstrated for all quinolones tested, namely nalidixic acid, oxolinic acid, pipemidic acid, cinoxacin, norfloxacin, and ofloxacin. The three-dimensional structure of (oa-T*GCGCA)2, where oa is an oxolinic acid residue, was solved by two-dimensional NMR spectroscopy and restrained molecular dynamics. In this complex, the oxolinic acid residues disrupt the terminal T1:A6 base pairs and stack on the G2:C5 base pairs. The displaced adenosine residues bind in the minor groove of the core duplex, while the thymidine residues pack against the oxolinic acid residues. The "molecular cap" thus formed fits tightly on the G:C base pairs, resulting in increased base-pairing fidelity, as demonstrated in UV melting experiments with the sequence oa-T*GGTTGAC and target strands containing a mismatched nucleobase. The structure of the "molecular cap" with its disrupted terminal base pair may also be helpful for modeling how quinolones block re-ligation of DNA strands in the active site of gyrases.     

Stochastic detection of motor protein-RNA complexes by single-channel current recording.

A label- and immobilization-free approach to detecting the reversible formation of complexes between nucleic acids and proteins at the single-molecule level is described. The voltage-driven translocation of individual oligoribonucleotides through a nanoscale protein pore is observed by single-channel current recordings. The oligoribonucleotide 5'-C25A(25)-3' gives rise to current blockades with an average duration of approximately 0.5 ms. In the presence of the RNA-binding ATPase P4, a viral packaging motor from bacteriophage phi8, longer events of tens to hundreds of milliseconds are observed. Upon addition of ATP the long events disappear, indicating the dissociation of the P4RNA complex. The frequency of events also depends on the concentration of P4 and the length of the oligoribonucleotide, thereby confirming the specificity of the P4RNA events. This study shows that single-channel current recordings can be used to monitor RNA-protein complex formation, thus opening up a new means to examine the motor activity of RNA- or DNA-processing enzymes.     

First mushroom-shaped adhesive microstructure: A review

This letter reviews the adhesive and frictional properties of the first mushroom-shaped adhesive microstructure (MSAMS), which has come a long way from inspiration by the attachment devices evolved in beetles to a large-scale industrial production. It was shown to have an that about twice higher pull-off force compared to a smooth control made from the same material measured on smooth substrates. Pull-off forces measured underwater are even higher than those in air. Moreover, it retained adhesive performance over thousands of attachment cycles and initial adhesive capability could be recovered by washing after being contaminated. In shearing, MSAMS exhibits reduced and stabilized friction in comparison with a smooth control, which demonstrated pronounced stick-slip motion, and shows zero pull-off force in a sheared state, allowing the adhesion to be switched on and off. The presence of a fluid in the contact zone showed adhesion enhancement on both smooth and rough substrates. All these features lead us to conclude that MSAMS may have practical potential in a variety of applications.     

Dielectric studies of two liquid crystalline benzoates with coupled and decoupled CN groups

The results of dielectric studies performed in a broad frequency range for two compounds, 4-cyanophenyl 4-n-heptylbenzoate (7BBCN) and 4-(4-cyanobutyloxy)phenyl 4- n-heptylbenzoate (7BB4CN), are compared. They have the same molecular core whereas the strongly polar CN group is attached to the benzene ring in 7BBCN or is separated from it by the butyloxy chain in 7BB4CN. 7BBCN has a nematic phase, whereas 7BB4CN exhibits a monotropic nematic and smectic A₂ polymorphism. Large differences in the dielectric properties of the two substances were found. The analysis of the results led to the conclusion that the antiparallel dipole-dipole associations are considerably stronger in the substance with a decoupled CN group.     

Pyrazinecarboxamides as potential elicitors of flavonolignan and flavonoid production in Silybum marianum and Ononis arvensis cultures in vitro

The effect of new synthetic pyrazinecarboxamide derivatives as potential elicitors of flavonolignan and flavonoid production in Silybum marianum and Ononis arvensis cultures in vitro was investigated. Both tested elicitors increased the production of flavonolignans in S. marianum callus and suspension cultures and flavonoids in O. arvensis callus and suspension cultures. Compound I, 5-(2-hydroxybenzoyl)-pyrazine-2-carboxamide, has shown to be an effective elicitor of flavonolignans and taxifoline production in Silybum marianum culture in vitro. The maximum content of silydianin (0.11%) in S. marianum suspension culture was induced by 24 h elicitor application in concentration of 1.159 × 10?3 mol/L. The maximum content of silymarin complex (0.08%) in callus culture of S. marianum was induced by 168 h elicitor application of a concentration 1.159 × 10?? mol/L, which represents contents of silydianin (0.03%), silychristin (0.01%) and isosilybin A (0.04%) compared with control. All three tested concentrations of compound II, N-(2-bromo-3-methylphenyl)-5-tert-butylpyrazin-2-carboxamide increased the flavonoid production in callus culture of O. arvensis in a statistically significant way. The best elicitation effect of all elicitor concentrations had the weakest c? concentration (8.36 × 10?? mol/L) after 168 h time of duration. The maximum content of flavonoids (about 5,900%) in suspension culture of O. arvensis was induced by 48 h application of c? concentration (8.36 × 10?? mol/L).     

Heat Transfer Evaluation Method in Complex Rotating Environments Employing IR Thermography and CFD

This article presents a measuring method for determination of convective heat transfer in rotating environments. The method is used to obtain temperature and Nusselt number distributions on optically accessible objects inside real operating environments, without the need for implementation of complex surface heat flux measurements. Temperature maps of the observed surfaces are acquired non-intrusively by infrared (IR) thermography, whereas heat flux data is computed numerically by computational fluid dynamics (CFD) tools. The method was employed on a rotating hollow blade, heated internally by secondary air flow. Experimental and numerical results for the observed blade side are compared in terms of surface temperature 2D distributions. Temperature distributions are further statistically evaluated and show good agreement, which is the basic precondition for combining experimental and numerical data by the method. Results are presented in terms of combined experimental-numerical Nusselt number shown as two-dimensional distribution on the blade pressure side.     

Magnetooptical force in the resonance field formed by elliptically polarized light waves

The screening of the Coulomb interaction is studied with regard to Friedel oscillations in multicomponent electron plasma structure. A double quantum well (QW) and a superlattice are considered. The groundstate energy of a donor (exciton) in a double quantum well is calculated by a variational method as a function of the population of subbands.