Ultramicrodetermination of nitrogen in organic compounds: VI. Capillary immutability due to glass corrosion by various solutions

The capillary immutability due to corrosion of glasses exposed to various solutions was studied. The analytical error of volume change caused by glass corrosion in a micro- and ultramicronitrometer was discussed. The present work has shown that the graduated tube of a decimicronitrometer made of borosilicate glass, which is used frequently in Dumas method, should be recalibrated after 1.5–2.3 months use. We therefore recommend the sealed tube method using an improved nitrometer for ultramicrodetermination of nitrogen in organic compounds.     

Formation of One‐Dimensional Helical Columns and Excimerlike Excited States by Racemic Quinoxaline‐Fused [7]Carbohelicenes in the Crystal

A series of quinoxaline‐fused [7]carbohelicenes (HeQu derivatives) was designed and synthesized to evaluate their structural and photophysical properties in the crystal state. The quinoxaline units were expected to enhance the light‐emitting properties and to control the packing structures in the crystal. The electrochemical and spectroscopic properties and excited‐state dynamics of these compounds were investigated in detail. The first oxidation potentials of HeQu derivatives are approximately the same as that of unsubstituted reference [7]carbohelicene (Heli), whereas their first reduction potentials are shifted to the positive by about 0.7 V. The steady‐state absorption, fluorescence, and circular dichroism spectra also became redshifted compared to those of Heli. The molecular orbitals and energy levels of the HOMO and LUMO states, calculated by DFT methods, support these trends. Moreover, the absolute fluorescence quantum yields of HeQu derivatives are about four times larger than that of Heli. The structural properties of the aggregated states were analyzed by single‐crystal analysis. Introduction of appropriate substituents (i.e., 4‐methoxyphenyl) in the HeQu unit enabled the construction of one‐dimensional helical columns of racemic HeQu derivatives in the crystal state. Helix formation is based on intracolumn π‐stacking between two neighboring [7]carbohelicenes and intercolumn CH ??? N interaction between a nitrogen atom of a quinoxaline unit and a hydrogen atom of a helicene unit. The time‐resolved fluorescence spectra of single crystals clearly showed an excimerlike delocalized excited state owing to the short distance between neighboring [7]carbohelicene units.     

Controllable Electronic Structures and Photoinduced Processes of Bay‐Linked Perylenediimide Dimers and a Ferrocene‐Linked Triad

A series of perylene‐3,4,9,10‐bis(dicarboximide) (PDI) dimers linked through the bay regions was systematically synthesized to examine the electronic structures and photophysical properties in dependence on the distance and orientation between the two PDI units. The spectroscopic and electrochemical measurements suggested that the coupling value of a directly linked PDI dimer (PDI)₂ is much larger than those of para‐ and meta‐phenylene‐bridged PDI dimers p‐(PDI)₂ and m‐(PDI)₂. The width of Davydov splitting was quantitatively evaluated to compare the coupling values between the two PDI units in these dimers by absorption spectroscopy in frozen 2‐methyl‐THF. Excimer formation of PDI dimers induced the strong fluorescence quenching and large red‐shifts. Femtosecond transient absorption revealed a broad absorption derived from an excimer in the range from about 600 nm to the near‐IR region. The rate constants of formation and decay of the excimer are strongly dependent on the coupling values. Time‐resolved measurements on ferrocene‐linked p‐(PDI)₂ revealed a competition between the photoinduced processes of electron transfer and excimer formation in PhCN, which is in sharp contrast with the sole electron‐transfer process in toluene.     

Base-catalyzed homo-brook rearrangement of diastereomeric 7,8- epoxy-7(trimethylsilyl)-6-tridecanols

Semi-quantitative rate measurement of base-catalyzed 1,3-migration of a silyl group from carbon to oxygen (homo-Brook rearrangement) using four diastereomerically pure title compounds revealed that the aptitude for the migration depends markedly on the configurational environment around the trimethylsilyl group of the respective substrate.     

Identification of a new excited state responsible for the in vivo unique absorption band of siphonaxanthin in the green alga Codium fragile

A marine green alga, Codium fragile, exhibits a characteristic in vivo absorption band of a specific keto-carotenoid, siphonaxanthin, at 535 nm. We examined the ultrafast fluorescence kinetics by direct excitation of this band after purification of light-harvesting complex II. On the basis of a high fluorescence anisotropy (0.39) up to 1 ps and a very short lifetime (60 fs), we identified the 535 nm band as a new electronically excited state (Sx) located between the S1 and S2 states. Excited-state dynamics of the Sx state were further discussed in relation to the energy transfer processes in the complexes.     

ProBiS-database: precalculated binding site similarities and local pairwise alignments of PDB structures

ProBiS-Database is a searchable repository of precalculated local structural alignments in proteins detected by the ProBiS algorithm in the Protein Data Bank. Identification of functionally important binding regions of the protein is facilitated by structural similarity scores mapped to the query protein structure. PDB structures that have been aligned with a query protein may be rapidly retrieved from the ProBiS-Database, which is thus able to generate hypotheses concerning the roles of uncharacterized proteins. Presented with uncharacterized protein structure, ProBiS-Database can discern relationships between such a query protein and other better known proteins in the PDB. Fast access and a user-friendly graphical interface promote easy exploration of this database of over 420 million local structural alignments. The ProBiS-Database is updated weekly and is freely available online at http://probis.cmm.ki.si/database.     

Mutual Kinetic Resolution in Aldol Condensation between 2-Phenylpropanal and 4,5-Dihydro-5-methyl-2-(trimethylsiloxy)-3-(trimethylsilyl)furan

The titanium(IV) chloride-mediated aldol condensation between title compounds proceeds with high diastereoselectivity (Cram) to give $\text{3a}$ exclusively (99% purity).     

Saturated hydraulic conductivity of a volcanic ash soil affected by repulsive potential energy in a multivalent anionic system

Acid rain is supposed to influence soil structures, because soils have pH-dependent charges. The adverse effects of acid rain on soils must be assessed. Although repulsive potential energy among soil clay particles generates swelling and dispersion, thereby changing the soil’s hydraulic conductivity, the relationship between hydraulic conductivity and repulsive potential energy has not been evaluated. Moreover, research into repulsive potential energy in multivalent counterionic systems has been rare. In this paper, repulsive potential energies for a volcanic ash soil (allophanic Andisol), which is characterized by a number of pH-dependent charges, were evaluated in a multivalent counterionic system. Changes in saturated hydraulic conductivity (K) of volcanic ash soil during dilute acid leaching and their relationship with the repulsive potential energies were examined. When nitric acid at pH 3 or 4 was leached, K decreased rapidly. On the other hand, the decrease in K attenuated as the proportion of sulfate in the dilute acid increased. Electrophoretic mobilities were measured and the zeta potentials were estimated. From the zeta potentials and the calculation of repulsive potential energies between the clay particles in the NO₃–SO₄ system, we concluded that the decrease in K for an acid solution with a high proportion of nitrate was due to swelling and dispersion of the soil induced by electrostatic repulsive potential energy. Because sulfate formed complexes on the clay surface, the repulsive potential energy decreased as the proportion of sulfate in the dilute acid increased. Then, the flocculation of the soil was maintained, thereby inhibiting the decrease in K.