Efficient conjugation and preferential DNA binding of oligonucleotides containing 2′-O-(2-oxoethyl)arabinouridine

Oligodeoxyribonucleotides were synthesized that contain a novel nucleoside, 2′-O-(2-oxoethyl)arabinouridine. Whereas such oligonucleotides showed only a slight reduction in the T_M values of their complexes with complementary DNA, a significant destabilization was observed in the case of duplexes formed with RNA. This may be explained by the C_2′-endo conformation of 2′-O-(2,3-dihydroxypropyl)arabinouridine as demonstrated by NMR experiments in D₂O. The modified oligonucleotides were used to synthesize a number of conjugates with dyes, biotin and a N-modified laminin peptide, by hydrazone and oxime formation. We suggest that the 2′-arabinoaldehyde-containing DNA duplexes may be valuable tools for affinity modification of DNA-binding proteins.     

Influence of the Degree of Deacetylation of Chitosan and BMP-2 Concentration on Biocompatibility and Osteogenic Properties of BMP-2/PLA Granule-Loaded Chitosan/β-Glycerophosphate Hydrogels

Compositions based on chitosan/β-glycerophosphate hydrogels with highly porous polylactide granules can be used to obtain moldable bone graft materials that have osteoinductive and osteoconductive properties. To eliminate the influence of such characteristics as chain length, degree of purification, and molecular weight on a designed material, the one-stock chitosan sample was reacetylated to degrees of deacetylation (DD%) of 19.5, 39, 49, 55, and 56. A study of the chitosan/β-glycerophosphate hydrogel with chitosan of a reduced DD% showed that a low degree of deacetylation increased the MSCs (multipotent stromal cells) viability rate in vitro and reduced the leukocyte infiltration in subcutaneous implantation to Wistar rats in vivo. The addition of 12 wt% polylactide granules resulted in optimal composite mechanical and moldable properties, and increased the modulus of elasticity of the hydrogel-based material by approximately 100 times. Excessive filling of the material with PLA (polylactide) granules (more than 20%) led to material destruction at a ~10% strain. Osteoinductive and osteoconductive properties of the chitosan hydrogel-based material with reacetylated chitosan (39 DD%) and highly porous polylactide granules impregnated with BMP-2 (bone morphogenetic protein-2) have been demonstrated in models of orthotopic and ectopic bone formation. When implanted into a critical-size calvarial defect in rats, the optimal concentration of BMP-2 was 10 μg/mL: bone tissue areas filled the entire material’s thickness. Implantation of the material with 50 μg/mL BMP-2 was accompanied with excessive growth of bone tissue and material displacement beyond the defect. Significant osteoinductive and osteoconductive properties of the material with 10 μg/mL of BMP-2 were also shown in subcutaneous implantation.     

Structure of the Polymer Obtained from Bisphenol-A and Cl 2 P(O)CH 3

Using the step-by-step build-up approach, the possible conformations of compound PhOP(O)(Me)OPh(Me) 2 Ph were constructed and geometrically optimized. Among the obtained structures 32 conformations belonging to low, comparable energy levels were used to construct the most stable dimers and tetramers of the title polymer. The results allowed us to estimate the geometrical structure of the polymer.     

Solving the Multidimensional Difference Biharmonic Equation by the Monte Carlo Method

We construct and justify new weighted Monte Carlo methods for estimation of a solution to the Dirichlet problem for the multidimensional difference biharmonic equation by modeling a random walk by a grid. Vector versions of our algorithms extend to the difference metaharmonic equations, with the shape of unbiasedness conditions of estimators preserved together with boundedness of their variances. In this connection, we construct a simple algorithm for estimation of the first eigenvalue of the multidimensional difference Laplace operator. Moreover, we construct special algorithms of a random walk by a grid which under certain conditions allow us to estimate solutions of the Dirichlet problem for the biharmonic equation with a weak nonlinearity as well as solutions to problems with mixed boundary conditions, the Neumann condition inclusively.     

Multiple‐pathways of carbon dioxide binding by a Lewis acid [B(C6F5)3] and a lewis base [P(tBu)3]: The energy landscape perspective

Using the reaction‐relevant two‐dimensional potential energy surface, an accurate reaction‐pathway mapping and ab inito molecular dynamics, it is shown that CO₂ capture by P(tBu)₃ and B(C₆F₅)₃ species has many nearly degenerate reaction‐routes to take. The explanation of that is in the topography of the transition state (saddle) area. An ensemble of asynchronous reaction‐routes of CO₂ binding is described in fine detail. © 2013 Wiley Periodicals, Inc.     

Fluorescent core-shell polymer particles containing luminophore dyes: synthesis and optical response to acetone

Monodisperse dye-containing crosslinked particles are promising for application in novel optical chemical sensors due to their intrinsic sensitivity. However, preparation of these particles in aqueous media still remains a challenge, since luminophores inhibit radical processes or else cannot embed into polymer chains because of difference in monomer reactivity ratios. In this work, novel dye-containing monodisperse crosslinked particles were prepared and characterized. In order to obtain dye-containing monodisperse crosslinked particles, we studied seed copolymerization of styrene in the presence of divinylbenzene. The influence of nature and concentration of the used comonomers and co-solvents on shape, size distributions and surface characteristics of the particles formed was investigated. Shapes and diameters of the particles were analyzed by DLS, TEM and SEM. The data of SEM and optical spectroscopy studies demonstrated that the synthesized particles were able to self-assemble into thin-film three-dimensional ordered structures. Finally, the structures under study are promising for development of sensor devices with optical response to acetone.     

Oxidation of Ethers,Alcohols, and Unfunctionalized Hydrocarbons by the Methyltrioxorhenium/H2O2 System: A Computational Study on Catalytic C?H Bond Activation

A concerted mechanism that does not involve an ionic intermediate was revealed by a DFT study on oxidation of ethers, alcohols, and unfunctionalized hydrocarbons by methyltrioxorhenium/H₂O₂. Instead, C? H insertion occurs through hydride transfer and then turns into a hydroxide transfer/rebound in a concerted fashion. The picture shows selected frames from an intrinsic reaction coordinate scan from the transition state to the product for the oxidation of cis‐1,2‐dimethylcyclohexane.

     

The importance of alkali cations in the [{RuCl2(p-cymene)}2]-pseudo-dipeptide-catalyzed enantioselective transfer hydrogenation of ketones

We studied the role of alkali cations in the [{RuCl2(p-cymene)}2]-pseudo-dipeptide-catalyzed enantioselective transfer hydrogenation of ketones with isopropanol. Lithium salts were shown to increase the enantioselectivity of the reaction when iPrONa or iPrOK was used as the base. Similar transfer-hydrogenation systems that employ chiral amino alcohol or monotosylated diamine ligands are not affected by the addition of lithium salts. These observations have led us to propose that an alternative reaction mechanism operates in pseudo-dipeptide-based systems, in which the alkali cation is an important player in the ligand-assisted hydrogen-transfer step. DFT calculations of the proposed transition-state (TS) models involving different cations (Li+, Na+, and K+) confirm a considerable loosening of the TS with larger cations. This loosening may be responsible for the fewer interactions between the substrate and the catalytic complex, leading to lower enantiodifferentiation. This mechanistic hypothesis has found additional experimental support; the low ee obtained with [BnNMe3]OH (a large cation) as base can be dramatically improved by introducing lithium cations into the system. Also, the complexation of Na+, K+, and Li+ cations by the addition of [15]crown-5 and [18]crown-6 ethers and cryptand 2.1.1 (which selectively bind to these cations and, thus, increase their bulkiness), respectively, to the reaction mixture led to a significant drop in the enantioselectivity of the reaction. The lithium effect has proved useful for enhancing the reduction of different aromatic and heteroaromatic ketones.     

Direct deposition of chitosan macromolecules on a substrate from solutions in supercritical carbon dioxide: Solubility and conformational analysis

Chitosan and its derivatives are promising materials for coating medical devices because this procedure improves their bio- and haemocompatibility. It is known that supercritical carbon dioxide attracts significant scientific interest in biomedical applications as well. Coatings deposited directly from solutions in supercritical carbon dioxide are expected to have particularly smooth and uniform morphology that should enhance their stability. We have tested the possibility of obtaining chitosan films using direct deposition from solutions in this fluid. In order to reveal benefits of this approach we modelled and studied the initial stage of formation of chitosan coatings with prototype system of depositing pioneer single polymer chains directly from such solutions on a model ultrasmooth mica substrate. We estimated achievable solubility of the chitosan materials in supercritical carbon dioxide and performed conformational analysis of the deposited chitosan chains on a substrate. AFM imaging directly demonstrated that the pioneer macromolecules adsorb as rather extended 2D coils from such solutions.