Soft agonist receptor interactions: Theoretical and experimental simulation of the active site of the receptor of sweet molecules

The structure-activity relationship of sweet molecules is chosen as an example to illustrate a mechanistic approach of soft agonist-receptor interactions. It is shown that an essentially geometric model of the receptor site can explain the activity of most sweet molecules, both rigid and flexible. The relevant conformations of flexible molecules in solution are extracted from a combination of NMR data and of energy calculations. A possible experimental simulation of the receptor environment in solution is illustrated by the complex of a dipeptide sweetener with a crown-ether.     

Improved high-performance liquid chromatographic determination with amperometric detection of alpha-amanitin in human plasma based on its voltammetric study

A sensitive and simple method is described for the selective determination in human plasma of alpha-amanitin, the most poisonous and prevalent toxin in the lethal fungi of species Amanita, using high-performance liquid chromatography with amperometric detection. After an extraction of plasma with disposable C18 silica cartridges, the extracts were separated by isocratic reversed-phase chromatography using a macroporous poly(styrene-divinylbenzene) column and a mobile phase of 0.05 M phosphate buffer-acetonitrile (91:9) at the apparent pH of 9.5. Amperometric detection was performed by applying an oxidation potential as low as +350 mV (vs. Ag/AgCl) to a glassy carbon electrode, in a thin-layer flow-cell. The linear range for alpha-amanitin was 3-200 ng/ml, and the relative limit of detection in plasma was 2 ng/ml at a signal-to-noise ratio of 2. The intra-assay precision was evaluated at levels of 10 and 200 ng/ml; the coefficients of variation were 4.5 and 2.6% (n = 5), respectively. Inter-assay coefficients of variation were 6.5 and 4.2% (n = 5) for the same concentrations of toxin. These analytical conditions have been chosen on the basis of a preliminary in batch cyclic voltammetric investigation of alpha-, beta- and gamma-amanitins, which has allowed their oxidation process to be clarified and the pH dependence of their oxidation potentials to be determined. All three amanitins are oxidized at the same potential values, and adsorption onto the electrode surface of both reactant and products was found in all cases. This adsorption did not affect the signal recorded for alpha- and gamma-amanitins at the amperometric detector, and for beta-amanitin a stronger adsorption for the anodic product was found, which leads to a marked positive shift of the potential required for the oxidation of this isomer in the amperometric detector cell.     

Use of apodization in quantitative spectroscopy

Apodization, which is a tool frequently used for cosmetic representation and efficient modeling of a spectrum, is now also adopted in techniques for the quantitative retrieval of parameters from observed spectra. Whether apodization can help in quantitative spectroscopy is the subject of debate in the literature. We find that, when the considered spectral range is wide enough to accurately model the instrument line shape, the same results can be obtained with and without apodization of the spectrum. However, when a truncation error is introduced by the limited extension of the modeled spectral interval, apodization can efficiently reduce this error. Therefore it is possible to save computing time by using apodization.     

Interchange-turbulence-based radial transport model for SOLPS-ITER: A COMPASS case study

Mean-field plasma edge transport codes such as SOLPS-ITER heavily rely on ad-hoc radial diffusion coefficients to approximately model anomalous transport. Such coefficients are experimentally determined and vary between different machines, and also depend on the operational regime and plasma location within the same device. Therefore, to match experimental data the modeller is required to manually tune several free parameters in expensive simulations, and the code's predictive capabilities are significantly downgraded. As a solution, a new model has been developed for SOLPS-ITER, solving an additional transport equation for the turbulent kinetic energy k, derived by consistently time-averaging the Braginskii equations, and including a diffusive closure for the anomalous particle flux. This closure model relates the anomalous diffusion coefficient to the local k value. The resulting equation structure and its closure are inspired by TOKAM2D isothermal interchange turbulence simulation results. Within this model, fewer and hopefully more universal free parameters are retained, thus improving the code's predictive capabilities. The new model has been tested on a COMPASS case for which upstream plasma profiles were available. Experimental data and a reference solution, obtained by matching the profiles through manual tuning of radial diffusivities, have been used to estimate the parameters of our new transport model. A ballooned particle diffusivity profile is retrieved by the new radial transport model, thanks to the proposed interchange drive. The obtained upstream profiles qualitatively agree with the experiment and prove the new model is a promising first attempt to be further refined.     

Thermal analysis of the combustion of charcoals from Eucalyptus dunnii obtained at different pyrolysis temperatures

DSC and TG/DTA were used to study charcoals obtained from eucalyptus wood at different pyrolysis temperatures, as well as the exchanged energy, and the transformations involved during the pyrolysis process. Charcoals DSC curves showed two exothermic peaks, at ~610 and ~750 K. The first peak was squashed for those charcoals obtained at higher final pyrolysis temperatures, and it disappeared in the charcoals obtained at 873 and 923 K. The second peak intensity increased and its location changed at the higher temperatures. Charcoal characterization showed a rise of heat values with the pyrolysis temperature.     

Influence of ultrasound on the preparation of ruthenium catalysts supported on alumina

Ultrasound waves are commonly used to clean or to erode the surface of solid materials thanks to the strength of the jets of solvent, hitting the surface itself, created by the collapse of the liquid phase. In the present work, ultrasound was used to obtain highly dispersed ruthenium on alumina catalysts. The samples were characterized with different techniques to study the influence of the sonication on both the metal crystallites and the support.     

An axiomatic duality framework for the theta body and related convex corners

Lovász theta function and the related theta body of graphs have been in the center of the intersection of four research areas: combinatorial optimization, graph theory, information theory, and semidefinite optimization. In this paper, utilizing a modern convex optimization viewpoint, we provide a set of minimal conditions (axioms) under which certain key, desired properties are generalized, including the main equivalent characterizations of the theta function, the theta body of graphs, and the corresponding antiblocking duality relations. Our framework describes several semidefinite and polyhedral relaxations of the stable set polytope of a graph as generalized theta bodies. As a by-product of our approach, we introduce the notion of “Schur Lifting” of cones which is dual to PSD Lifting (more commonly used in SDP relaxations of combinatorial optimization problems) in our axiomatic generalization. We also generalize the notion of complements of graphs to diagonally scaling-invariant polyhedral cones. Finally, we provide a weighted generalization of the copositive formulation of the fractional chromatic number by Dukanovic and Rendl from 2010.     

Enantiomeric Composition of Chiral β-Hydroxylamides by 1H NMR Spectroscopy Using Chiral Solvating Agent

Studies of the perturbing effect of the trifluoromethylanthryl carbinol used as chiral solvating agent (CSA) upon the ¹H NMR spectra of chiral α-O-substituted β-hydroxylamides demonstrated the ability of this fluoroalcohol to afford diastereomeric solvates with these solutes. Thus, for all the tested amides, there is at least one possibility to proceed to their enantiomeric discrimination by ¹H NMR using CSA. The method was developed to determine (later and indirectly) a possible chiral recognition during in vitro enzymatic hydrolysis in locust biological tissues of N-acylaziridines conceived as proinsecticides of carboxylic acids, in view to eventually optimize their efficiency.