Polycyclic N-hetero compounds. XXXIV. Syntheses and evaluation of antidepressive activity of benzofuro-[2,3-e]imidazo[1,2-c]pyrimidines and their precursors

Syntheses of 2,3-dihydrobenzofuro[2,3-e]imidazo[1,2-c]pyrimidine and its 5-substituted derivatives, corresponding to B-nor-6-oxa-11,13,15-triazasteroids, are described. These products and their precursors were screened to evaluate the antidepressive activity.     

Novel rearrangement of twisted 2,4-di-alkyl 2-trans-4-trans pentadienals: An approach to cyclopentenones based on molecular mechanical consideration

Rearrangement of 2,4-di-$\text{trans}$-pentadienals $\text{IVa-d}$ was described as a consequence of the successive alkyl substitutions on the C-2 and C-4 positions. ¹H-FT nmr spectroscopy suggested that the reaction involves ketene $\text{VIII}$ as an intermediate.     

Polycyclic N-heterocyclic compounds. XLI. Synthesis of 4-substituted 6,7-dihydro-5H-pyrimido[5,4-d][1]benzazepines, 1,2,5,6-tetrahydro-4H-imidazo[1′,2′:1,6]pyrimido[5,4-d][1]benzazepines and their related compounds as a series of potential blood platelet aggregation inhibitors

As a series of polyheterocyclic compounds for exploitation as anti-platelet agents, tricyclic heterocyclic compounds, 4-substituted 6,7-dihydro-5H-pyrimido[5,4-d][1]benzazepines 3–6, 9, 12–14 , and 16–26 , having nitrogen, oxygen, or sulfur containing functional groups at the 4-position, were prepared. In addition, tetra-cyclic heterocyclic compounds, 3-methyl-1,2,5,6-tetrahydro-4H-imidazo[1′,2′:1,6]pyrimido[5,4-d][1]benzaze-pinium chloride ( 7 ), 1,2,5,6-tetrahydro-4H-imidazo[1′,2′:1,6]pyrimido[5,4-d][1]benzazepines 10a-e , 2,3,6,7-tetrahydro-1H 5H-pyrimido[1′,2′:1,6]pyrimido[5,4-d][1]benzazepine ( 11 ), and 1,2,5,6-tetrahydro-4H-thiazolo-[3′,2′:1,6]pyrimido[5,4-d][1]benzazepinium chloride ( 15 ) via ring closure of 4-(hydroxyalkylamino)- 6, 9a-e , and 3c , and 4-(2-hydroxyethylthio)-6,7-dihydro-5H-pyrimido[5,4-d][1]benzazepine ( 14 ) with phosphoryl chloride or thionyl chloride, respectively, were also prepared. Their inhibitory activities against collagen-induced aggregation of rabbit blood platelets in vitro were investigated. Among them, compound 5 having a morpholino group at the 4-position on the tricyclic nucleus, which enhanced the activity more than 14-fold as compared with aspirin, was found to have the most satisfactory in inhibitory activity.     

Enzyme and Nonenzyme Hydrolyses of End Ester Group in Polyethylene Glycol Esters

The enzyme and nonenzyme hydrolyses of the end ester group in polyethylene glycol (PEG) esters were studied. The end monoester in PEG ester is known to be easily hydrolyzed by alkaline or acidic solution. 2-Methyl-ω-benzoyloxypoly(oxy-1,2-ethanediyl)(Bz-PEG) and 2-methyl-ω-4-nitrobenzoyloxypoly(oxy-1,2-ethanediyl) were found to be hydrolyzed by lipase and esterase in Tris buffer solution (pH 7.7) but 2-methyl-ω-acetoxypoly(oxy-1,2-ethanediyl) was not. The parameters of enzyme reaction in the hydrolysis of ester bonds in Bz-PEG by esterase were estimated to be as follows: V_max = 6.09 × 10^?7 mol/dm^3.s, K_m = 7.63 × 10^?4 mol/dm³.     

Trace gas detect based on spectral analysis and harmonic ratio

Optical Review - A novel method of gas concentration calibration for tunable diode laser absorption spectroscopy, in which spectral analysis and harmonic signal intensity ratio measurement are...     

A new set of atomic radii for accurate estimation of solvation free energy by Poisson–Boltzmann solvent model

The Poisson–Boltzmann implicit solvent (PB) is widely used to estimate the solvation free energies of biomolecules in molecular simulations. An optimized set of atomic radii (PB radii) is an important parameter for PB calculations, which determines the distribution of dielectric constants around the solute. We here present new PB radii for the AMBER protein force field to accurately reproduce the solvation free energies obtained from explicit solvent simulations. The presented PB radii were optimized using results from explicit solvent simulations of the large systems. In addition, we discriminated PB radii for N‐ and C‐terminal residues from those for nonterminal residues. The performances using our PB radii showed high accuracy for the estimation of solvation free energies at the level of the molecular fragment. The obtained PB radii are effective for the detailed analysis of the solvation effects of biomolecules. © 2014 The Authors Journal of Computational Chemistry Published by Wiley Periodicals, Inc.     

Inaccessibility in online learning of recurrent neural networks

We apply nonlinear dynamical system techniques to recurrent neural networks. In particular, we numerically analyze the dynamical system characteristics of the online learning process. By introducing the notion of inaccessibility, we show that the learning process is well characterized by strong nonhyperbolicity and inaccessibility, which is a greater uncertainty than chaotic unpredictability. These results are clearly contrasted with a gradient descent dynamics, or ordinary chaos.     

Unconventional salt trend from soft to stiff in single neurofilament biopolymers

We present persistence length measurements on neurofilaments (NFs), an intermediate filament with protruding side arms, of the neuronal cytoskeleton. Tapping mode atomic force microscopy enabled us to visualize and trace at subpixel resolution photoimmobilized NFs, assembled at various subunit protein ratios, thereby modifying the side-arm length and chain density charge distribution. We show that specific polyampholyte sequences of the side arms can form salt-switchable intrafilament attractions that compete with the net electrostatic and steric repulsion and can reduce the total persistence length by half. The results are in agreement with present X-ray and microscopy data yet present a theoretical challenge for polyampholyte interchain interactions.     

Orientation Control of Photo‐Immobilized Antibodies on the Surface of Azobenzene‐Containing Polymers by the Introduction of Functional Groups

In our photo‐induced immobilization technique for an antibody (IgG) using azopolymers, the introduction of COOH and NMe₂ into the azopolymers, which can introduce surface charges, strongly affected the immobilization properties such as the efficiency of immobilization and the activity of the immobilized IgG (i.e., the orientation of the immobilized IgG). The introduction of COOH promoted a more active orientation of the immobilized IgG. The orientation was determined during the adsorption process onto the azopolymer surface in solution before photo‐immobilization, and was maintained during the photo‐immobilization. The surface charge of the azopolymer appears to be an important factor for IgG orientation, which involves electrostatic interactions between its Fab and the azopolymer surface.