Identification of archaeal proteins that affect the exosome function in vitro

Background  

The archaeal exosome is formed by a hexameric RNase PH ring and three RNA binding subunits and has been shown to bind and degrade RNA in vitro. Despite extensive studies on the eukaryotic exosome and on the proteins interacting with this complex, little information is yet available on the identification and function of archaeal exosome regulatory factors.     

Spin observables in the NN→NΔ transition

The 16 independent amplitudes making up the NN → NΔ scattering matrix are written in forms suitable for calculating observables, particularly, spin observables. Some of these observables are calculated, using amplitudes of the unitary Aaron-Amado-Young three-body model with iterated pion-exchange forces and displayed as functions of the production angle, the incident energy and the invariant mass of Δ. Comparisons with simpler models are also given.     

Modulation of humoral immune response to oral BCG vaccination by Mycobacterium bovis BCG Moreau Rio de Janeiro (RDJ) in healthy adults

We hypothesize that the energy strategy of a cell is a key factor for determining how, or if, the immune system interacts with that cell. Cells have a limited number of metabolic states, in part, depending on the type of fuels the cell consumes. Cellular fuels include glucose (carbohydrates), lipids (fats), and proteins. We propose that the cell's ability to switch to, and efficiently use, fat for fuel confers immune privilege. Additionally, because uncoupling proteins are involved in the fat burning process and reportedly in protection from free radicals, we hypothesize that uncoupling proteins play an important role in immune privilege. Thus, changes in metabolism (caused by oxidative stresses, fuel availability, age, hormones, radiation, or drugs) will dictate and initiate changes in immune recognition and in the nature of the immune response. This has profound implications for controlling the symptoms of autoimmune diseases, for preventing graft rejection, and for targeting tumor cells for destruction.     

Proton yields from quasielastic pion scattering on 27Al and 208Pb

A singles measurement of the quasielastic scattering of 255 MeV pions by ²⁷Al and ²⁰⁸Pb has been made. The measured values for the ratio R of π⁺ and π^? induced cross section, averaged over all measured angles of 2.2 ± 0.2 and 1.5 ± 0.1 for ²⁷Al and ²⁰⁸Pb respectively are substantially below the classical impulse approximation value of 11. A semiclassical nucleon charge exchange model is described for singles and coincidence measurements and is compared with the measured proton spectra. The comparison indicates that the singles proton spectra are dominated by events other than the quasielastic process whereas the coincidence data reported earlier and compared with the present calculations support the quasielastic interpretation. A strongly decreasing dependence of R on A for coincidence measurements may be interpreted as supporting the view that recoil nucleon charge exchange plays an important role in the quasielastic knockout process.     

Many-body field theoretic framework for inelastic pion-nucleus scattering

We consider inelastic scattering of pions from nuclei using many-body quantum field theory methods. We find that, in an inelastic amplitude for small energy transfer, one can separate out effects of particle-hole correlations in the final nuclear state. The ratio of π⁺ and π^? inelastic cross sections can differ substantially from the analogous ratio for free πN scattering.     

Nucleon-nucleon dynamics at medium energies: (I). Unitary model for elastic and inelastic scattering

A framework is presented for a unified theory of elastic nucleon-nucleon scattering and single-pion production at medium energies. The model is relativistic, unitary, and takes into account all spin complications. In the simplest version of the theory the driving mechanism is one-pion exchange but the model can be extended to include short-range forces. The resulting set of coupled linear integral equations have the structure of three-body equations and can be solved exactly. The method of solution is discussed.     

Anti-Inflammatory and Anti-Rheumatic Potential of Selective Plant Compounds by Targeting TLR-4/AP-1 Signaling: A Comprehensive Molecular Docking and Simulation Approaches

Plants are an important source of drug development and numerous plant derived molecules have been used in clinical practice for the ailment of various diseases. The Toll-like receptor-4 (TLR-4) signaling pathway plays a crucial role in inflammation including rheumatoid arthritis. The TLR-4 binds with pro-inflammatory ligands such as lipopolysaccharide (LPS) to induce the downstream signaling mechanism such as nuclear factor κappa B (NF-κB) and mitogen activated protein kinases (MAPKs). This signaling activation leads to the onset of various diseases including inflammation. In the present study, 22 natural compounds were studied against TLR-4/AP-1 signaling, which is implicated in the inflammatory process using a computational approach. These compounds belong to various classes such as methylxanthine, sesquiterpene lactone, alkaloid, flavone glycosides, lignan, phenolic acid, etc. The compounds exhibited different binding affinities with the TLR-4, JNK, NF-κB, and AP-1 protein due to the formation of multiple hydrophilic and hydrophobic interactions. With TLR-4, rutin had the highest binding energy (−10.4 kcal/mol), poncirin had the highest binding energy (−9.4 kcal/mol) with NF-κB and JNK (−9.5 kcal/mol), respectively, and icariin had the highest binding affinity (−9.1 kcal/mol) with the AP-1 protein. The root means square deviation (RMSD), root mean square fraction (RMSF), and radius of gyration (RoG) for 150 ns were calculated using molecular dynamic simulation (MD simulation) based on rutin’s greatest binding energy with TLR-4. The RMSD, RMSF, and RoG were all within acceptable limits in the MD simulation, and the complex remained stable for 150 ns. Furthermore, these compounds were assessed for the potential toxic effect on various organs such as the liver, heart, genotoxicity, and oral maximum toxic dose. Moreover, the blood–brain barrier permeability and intestinal absorption were also predicted using SwissADME software (Lausanne, Switzerland). These compounds exhibited promising physico-chemical as well as drug-likeness properties. Consequently, these selected compounds portray promising anti-inflammatory and drug-likeness properties.