Synthesis, characterization and antifungal evaluation of 5-substituted-4-amino-1,2,4-triazole-3-thioesters

A series of 5-substituted-4-amino-1,2,4-triazole-3-thioesters was synthesized by converting variously substituted organic acids successively into the corresponding esters, hydrazides, 5-substituted-1,3,4-oxadiazole-2-thiols, 5-substituted-1,2,4-triazole-2-thiols and 5-substituted-1,3,4-oxadiazole-2-thioesters. Finally the target compounds were obtained by refluxing 5-substituted-1,3,4-oxadiazole-2-thioesters in the presence of hydrazine hydrate and absolute alcohol. The structures of the synthesized compounds were established by physicochemical and spectroscopic methods. The synthesized compounds were evaluated for their in vitro antifungal activity. Some of the evaluated compounds possessed significant antifungal activity as compared to a terbinafine standard.     

Development of a fluorescence model for the determination of constants associated with binding,quenching, and Förster resonance energy transfer efficiency

Determining accurate dissociation constants for equilibrium processes involving a fluorescent mechanism can prove to be quite challenging. Typically, titration curves and nonlinear least squares fitting of the data using computer programs are employed to obtain such constants. However, these approaches only consider the total fluorescence signal and often ignore other energy transfer processes within the system. The current model considers the impact on fluorescence from equilibrium binding (viz., metal-ligand, ligand-substrate, etc.), quenching, and resonance energy transfer. This model should provide more accurate binding constant as well as insights into other photonic processes. The equations developed for this model are discussed and are applied to experimental data from titrimetric experiments. Since the experimental data are generally in excess of the number of parameters that are needed to define the system, fitting is operated in an overdetermined mode and employs error minimization (either absolute or relative) to define goodness of fit. Examples of how changes in certain parameters affect the shape of the titrimetric curve are also presented. The current model does not consider chelation-enhanced fluorescence.     

Uniform catalytic site in Sn-beta-zeolite determined using X-ray absorption fine structure

The Sn silicate zeolite, Sn-beta, has been shown to be an efficient, selective heterogeneous catalyst for Baeyer-Villiger oxidations. Using primarily a multishell fit to extended X-ray absorption fine structure (EXAFS) data, we show that the Sn does not randomly insert into the beta-zeolite structure but rather occupies identical, specific, crystallographic sites. These sites are the T5/T6 sites in the six-membered rings. Moreover, the Sn is substituted in pairs on opposite sides of these six-membered rings. We believe that it is the specific, uniform crystallographic location of the Sn in the beta crystal structure that leads to sites with uniform catalytic activity, and consequently to the high chemical selectivity demonstrated for this catalyst. This manifests itself in the almost enzyme-like selectivity of this catalyst in Baeyer-Villiger oxidations. This uniform site distribution of the Sn suggests that there is likely a symbiotic relationship between the structure-directing agent in the zeolite synthesis and the Sn heteroatoms during the framework formation.     

Ciliation and lamellae in crystalline polymers

Molecular cilia, the uncrystallized portions of chains already partly attached to polymer crystals, exert a profound influence on the course of polymeric crystallization with ultimate responsibility for the divergence of adjacent lamellae which leads to spherulitic growth. Their effective size and pressure have been measured, in α-polypropylene, from electron microscopic measurements of the separation and maximum curvature of lamellae in row structures. That cilia exist and extend the effective region occupied by a lamella beyond the geometrical confines of its fold surfaces is important for crystallization theory and may well have implications for the connection of lamellae into networks and for gelation.     

Higher-order polynomial invariants of 3-manifolds giving lower bounds for the Thurston norm

We define an infinite sequence of new invariants, δ_n, of a group G that measure the size of the successive quotients of the derived series of G. In the case that G is the fundamental group of a 3-manifold, we obtain new 3-manifold invariants. These invariants are closely related to the topology of the 3-manifold. They give lower bounds for the Thurston norm which provide better estimates than the bound established by McMullen using the Alexander norm. We also show that the δ_n give obstructions to a 3-manifold fibering over S¹ and to a 3-manifold being Seifert fibered. Moreover, we show that the δ_n give computable algebraic obstructions to a 4-manifold of the form X×S¹ admitting a symplectic structure even when the obstructions given by the Seiberg-Witten invariants fail. There are also applications to the minimal ropelength and genera of knots and links in S³.     

The versatile chemistry of the [B20H18]2- ions: novel reactions and structural motifs

Among the polyhedral [closo-BnHn]2- ion series (n = 5-12 inclusive) the aromatic [closo-B10H10]2- ion is both readily available and quite reactive. Among its many reactions which retain its cage structure one finds the oxidative dimerization reaction in which two [closo-B10H12]2- ions each formally lose a hydride ion and undergo dimerization of the resulting [closo-B10H9]- ions to produce the [trans-B20H18]2- ion. The two-component [closo-B10H9]- ions of the latter are linked together by a pair of unique B-B-B bonds which provide unprecedented reactivity to the structure. Among these reactions are the two-electron reduction to a set of three interconvertible [B20H18]4- ions having intercage B-B bonds and the related reductive substitution reaction in which [trans-B20H18]2- undergoes attack by nucleophile, L, to produce [B20H18L]2-. The latter species is formally a substituted [B20H19]3- (L = H) ion formed by B-B bond protonation of one of the isomeric [B20H18]4- ions. These and a variety of novel reactions are described here along with interrelated reaction mechanisms considered for the first time.     

Intermolecular vibrational coherence in the bacteriochlorophyll proteins B777 and B820 from Rhodospirillum rubrum

The low-frequency vibrational coherence in the bacteriochlorophyll (BChl)-containing subunit proteins B777 and B820 from the LH1 light-harvesting complex isolated from Rhodospirillum rubrum G9 exhibits rapidly damped modulation components arising from intermolecular, formally nonbonding interactions between the BChl macrocycle and polar groups in the surrounding detergent or protein. The vibrational coherence observed in the monomeric B777 system resembles that observed previously with BChl in acetone because it contains a pair of broad overlapping line shapes with a mean frequency of 191 cm(-1), but the 10:1 intensity ratio of the librational and translational components is distinctive of the motions of the polar head groups in the nonionic detergent micelle that solvates the BChl macrocycle. In contrast, the vibrational coherence observed with the dimeric B820 complex is almost 20 times weaker in intensity and exhibits narrower line shapes and lower average frequencies than observed in B777. The structure of the B820 complex sterically protects the pair of BChl macrocycles from the surrounding solvent, so modulation components assigned to intrinsic interactions between the BChl and the protein and between the pair of BChl's are revealed. A relatively well-ordered interaction between the BChl macrocycle and a tryptophan residue in each alpha-helical polypeptide accounts for a 28 cm(-1) component with a narrow line shape, but most of the intensity arises from a broader 46 cm(-1) component that is assigned to the interaction between the paired BChl macrocycles. The breadth of the line shape for this component is a measure of the disorder in the ensemble of B820 subunits. The results support the hypothesis that the excited-state vibrational dynamics and the optical and/or Marcus charge-transfer reorganization energies of BChl in photosynthetic light-harvesting proteins and reaction centers are strongly controlled by van der Waals modes with neighboring molecules, with dominant contributions to the intermolecular potential arising from the London dispersion and dipole-dipole interactions.     

Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) has been used to determine the mass of a double-stranded 500 base-pair (bp) polymerase chain reaction (PCR) product with an average theoretical mass of the blunt-ended (i.e. unadenylated) species of 308 859.35 Da. The PCR product was generated from the linearized bacteriophage Lambda genome which is a double-stranded template. Utilization of ethanol precipitation in tandem with a rapid microdialysis step to purify and desalt the PCR product was crucial to obtain a precise mass measurement. The PCR product (0.8 pmol/μL) was electrosprayed from a solution containing 75% acetonitrile, 25 mM piperidine, and 25 mM imidazole and was infused at a rate of 200 nL/min. The average molecular mass and the corresponding precision were determined using the charge-states ranging from 172 to 235 net negative charges. The experimental mass and corresponding precision (reported as the 95% confidence interval of the mean) was 309 406 +/- 27 Da (87 ppm). The mass accuracy was compromised due to the fact that the PCR generates multiple products when using Taq polymerase due to the non-template directed 3'-adenylation. This results in a mixture of three PCR products with nearly identical mass (i.e. blunt-ended, mono-adenylated and di-adenylated) with unknown relative abundances that were not resolved in the spectrum. Thus, the experimental mass will be a weighted average of the three species which, under our experimental conditions, reflects a nearly equal concentration of the mono- and di-adenylated species. This report demonstrates that precise mass measurements of PCR products up to 309 kDa (500 bp) can be routinely obtained by ESI-FTICR requiring low femtomole amounts. Copyright 1999 John Wiley & Sons, Ltd.     

Electrical properties of a-antimony selenide

This paper reports conduction mechanism in a-Sb₂Se₃ over a wide range of temperature (238 to 338 K) and frequency (5 Hz to 100 kHz). The d.c. conductivity measured as a function of temperature shows semiconducting behaviour with activation energy ΔE=0.42 eV. Thermally induced changes in the electrical and dielectric properties of a-Sb₂Se₃ have been examined. The a.c. conductivity in the material has been explained using modified CBH model. The band conduction and single polaron hopping is dominant above room temperature. However, in the lower temperature range the bipolaron hopping dominates.